miRNA display CGI


Results 181 - 200 of 441 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 5' -54.3 NC_005261.1 + 59137 0.67 0.886525
Target:  5'- cGCcuccgCAGCaaCCCCAUGAAG-GCGCu -3'
miRNA:   3'- cCGua---GUCGccGGGGUAUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 59143 0.68 0.879394
Target:  5'- aGGC--CGGCGcGCCCCG---GGcGCGCg -3'
miRNA:   3'- -CCGuaGUCGC-CGGGGUauuUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 59661 0.73 0.625591
Target:  5'- gGGCGaacUCGGCGGUCCCGgc----GCGCg -3'
miRNA:   3'- -CCGU---AGUCGCCGGGGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 60254 0.74 0.553032
Target:  5'- cGGCGggAGCGGCggCCGUGAAGagGCGCc -3'
miRNA:   3'- -CCGUagUCGCCGg-GGUAUUUCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 60367 0.68 0.879394
Target:  5'- aGGCAgu-GCuuGGUCUCGUuggcGAGGUGCGCc -3'
miRNA:   3'- -CCGUaguCG--CCGGGGUA----UUUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 60670 0.68 0.856648
Target:  5'- gGGCG-CGGCGGCgCCAcUGgcGgcgGCGCc -3'
miRNA:   3'- -CCGUaGUCGCCGgGGU-AUuuCa--CGCG- -5'
23571 5' -54.3 NC_005261.1 + 60909 0.69 0.796524
Target:  5'- cGGCGcCGGCGgaaGCUCCGgcUGgcGUGCGCg -3'
miRNA:   3'- -CCGUaGUCGC---CGGGGU--AUuuCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 61199 0.68 0.872034
Target:  5'- gGGCcgCGcgcGCGGCCUCGgcgucggcgagGAGGgcgGCGCg -3'
miRNA:   3'- -CCGuaGU---CGCCGGGGUa----------UUUCa--CGCG- -5'
23571 5' -54.3 NC_005261.1 + 61448 0.71 0.738865
Target:  5'- cGCcugCAGaCGGaCCCCGUGGAGUaccuuuucGCGCa -3'
miRNA:   3'- cCGua-GUC-GCC-GGGGUAUUUCA--------CGCG- -5'
23571 5' -54.3 NC_005261.1 + 61995 0.66 0.929692
Target:  5'- aGGCcgcCAGC-GCCCCGUAcAGgcaaaaGCGCc -3'
miRNA:   3'- -CCGua-GUCGcCGGGGUAUuUCa-----CGCG- -5'
23571 5' -54.3 NC_005261.1 + 62044 0.69 0.831999
Target:  5'- cGGC-UCGGcCGGCUCCAg-----GCGCa -3'
miRNA:   3'- -CCGuAGUC-GCCGGGGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 62238 0.68 0.879394
Target:  5'- gGGCGUCcagcgcgagGGCGGCcgcgCCCGggaAGAGcUGCGUg -3'
miRNA:   3'- -CCGUAG---------UCGCCG----GGGUa--UUUC-ACGCG- -5'
23571 5' -54.3 NC_005261.1 + 62257 0.7 0.767299
Target:  5'- cGGCGUCaccugguAGCGGCgCCCGUuguGGUacaucacgucgGCGCc -3'
miRNA:   3'- -CCGUAG-------UCGCCG-GGGUAuu-UCA-----------CGCG- -5'
23571 5' -54.3 NC_005261.1 + 62298 0.66 0.93487
Target:  5'- aGGCcUCGuacacGCGGgCCaCGUAgcGUGUGCa -3'
miRNA:   3'- -CCGuAGU-----CGCCgGG-GUAUuuCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 62309 0.74 0.573583
Target:  5'- gGGCGcgCGGCGGCCCCGc--GGUcccccaGCGCc -3'
miRNA:   3'- -CCGUa-GUCGCCGGGGUauuUCA------CGCG- -5'
23571 5' -54.3 NC_005261.1 + 62526 0.69 0.805647
Target:  5'- aGGCGccgcgCGGCaugGGCCCCAcgccgAGAG-GCGCc -3'
miRNA:   3'- -CCGUa----GUCG---CCGGGGUa----UUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 63027 0.69 0.831999
Target:  5'- cGCcgCcaccGCGGCCgCCAUGAAGguccgcgacaUGCGCc -3'
miRNA:   3'- cCGuaGu---CGCCGG-GGUAUUUC----------ACGCG- -5'
23571 5' -54.3 NC_005261.1 + 63689 0.66 0.929692
Target:  5'- cGCGUCAuauacagguucuGCGGCguguugcccaggUCCGUGAGcggcGUGCGCa -3'
miRNA:   3'- cCGUAGU------------CGCCG------------GGGUAUUU----CACGCG- -5'
23571 5' -54.3 NC_005261.1 + 63725 0.66 0.93487
Target:  5'- uGGCccCGGCGccGCCCCG--AAGaGCGCc -3'
miRNA:   3'- -CCGuaGUCGC--CGGGGUauUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 64085 0.71 0.738865
Target:  5'- uGGCGUagUAGuUGGCgCCCAcAAAGUGCGg -3'
miRNA:   3'- -CCGUA--GUC-GCCG-GGGUaUUUCACGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.