miRNA display CGI


Results 101 - 120 of 441 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 5' -54.3 NC_005261.1 + 34459 0.7 0.768263
Target:  5'- gGGCAcgggcCGGgGGCCCCGUAccugcggcGGGUGCu- -3'
miRNA:   3'- -CCGUa----GUCgCCGGGGUAU--------UUCACGcg -5'
23571 5' -54.3 NC_005261.1 + 34783 0.75 0.512655
Target:  5'- gGGCG-CGGCGGCCgaCCGcGAGGcGCGCg -3'
miRNA:   3'- -CCGUaGUCGCCGG--GGUaUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 34842 0.67 0.906495
Target:  5'- aGGCGcaGGCGGCCgCGgcgcGGcgGCGCg -3'
miRNA:   3'- -CCGUagUCGCCGGgGUauu-UCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 35239 0.73 0.625591
Target:  5'- cGCGU-GGCGGCCgCCGUGucGcGCGCg -3'
miRNA:   3'- cCGUAgUCGCCGG-GGUAUuuCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 35524 0.67 0.91859
Target:  5'- cGGCAUCGGCGGCaacaaCAgcagcaacGGUG-GCg -3'
miRNA:   3'- -CCGUAGUCGCCGgg---GUauu-----UCACgCG- -5'
23571 5' -54.3 NC_005261.1 + 35552 0.66 0.946285
Target:  5'- cGGCcgCGGCGgacgcggcgcugggcGCCgCGgagGAGGUGCuGCg -3'
miRNA:   3'- -CCGuaGUCGC---------------CGGgGUa--UUUCACG-CG- -5'
23571 5' -54.3 NC_005261.1 + 35714 0.67 0.906495
Target:  5'- gGGCucggUGGCGGCCCCGgccGAGGccaccUGgGCc -3'
miRNA:   3'- -CCGua--GUCGCCGGGGUa--UUUC-----ACgCG- -5'
23571 5' -54.3 NC_005261.1 + 35750 0.69 0.823394
Target:  5'- uGGCG-CGGCGGCgCgCCGaGGAGguccgGCGCc -3'
miRNA:   3'- -CCGUaGUCGCCG-G-GGUaUUUCa----CGCG- -5'
23571 5' -54.3 NC_005261.1 + 35803 0.66 0.928091
Target:  5'- uGGCG-CGGgacggccuggacccCGGCCCCG-AGAGcucgGCGCa -3'
miRNA:   3'- -CCGUaGUC--------------GCCGGGGUaUUUCa---CGCG- -5'
23571 5' -54.3 NC_005261.1 + 36113 0.67 0.893421
Target:  5'- cGCGUUcucccuGGCGGCCCC------UGCGCu -3'
miRNA:   3'- cCGUAG------UCGCCGGGGuauuucACGCG- -5'
23571 5' -54.3 NC_005261.1 + 36583 0.66 0.939799
Target:  5'- gGGCccgCcGCGGCCaCCGgggGGGGgcaGCGCu -3'
miRNA:   3'- -CCGua-GuCGCCGG-GGUa--UUUCa--CGCG- -5'
23571 5' -54.3 NC_005261.1 + 36637 0.66 0.93487
Target:  5'- cGGCAaaGGCGGCgCgCGcGGAGgccacgGCGCg -3'
miRNA:   3'- -CCGUagUCGCCG-GgGUaUUUCa-----CGCG- -5'
23571 5' -54.3 NC_005261.1 + 36809 0.67 0.91859
Target:  5'- cGCcUCGGCGGCCgacgUCGUGAcgcaAGcgGCGCu -3'
miRNA:   3'- cCGuAGUCGCCGG----GGUAUU----UCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 36944 0.69 0.796524
Target:  5'- cGCAUCGacgaccGCGGgCCCAUGGAGcccuuUGCGg -3'
miRNA:   3'- cCGUAGU------CGCCgGGGUAUUUC-----ACGCg -5'
23571 5' -54.3 NC_005261.1 + 37303 0.71 0.728859
Target:  5'- gGGCcugCAGCGGCUgCAggcGAcgcucgcggcGGUGCGCg -3'
miRNA:   3'- -CCGua-GUCGCCGGgGUa--UU----------UCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 37866 0.66 0.929692
Target:  5'- cGGCcUCGGUcGCCgCCGUGAAcGUGCu- -3'
miRNA:   3'- -CCGuAGUCGcCGG-GGUAUUU-CACGcg -5'
23571 5' -54.3 NC_005261.1 + 38161 0.71 0.728859
Target:  5'- gGGCG-CGGCGcGCCCCcgGGcggcGGcgGCGCg -3'
miRNA:   3'- -CCGUaGUCGC-CGGGGuaUU----UCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 38167 0.66 0.924266
Target:  5'- cGGCcgCAGCacGGCUgCcUGGAGgccuggGCGCg -3'
miRNA:   3'- -CCGuaGUCG--CCGGgGuAUUUCa-----CGCG- -5'
23571 5' -54.3 NC_005261.1 + 38315 0.67 0.906495
Target:  5'- cGCAg-GGCGGCCCgAUGGuguucaugcucuGGgGCGCg -3'
miRNA:   3'- cCGUagUCGCCGGGgUAUU------------UCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 38487 0.7 0.745812
Target:  5'- cGGCcgCGGCGGCgUCGacuggagcgucguaUAAGGcGCGCg -3'
miRNA:   3'- -CCGuaGUCGCCGgGGU--------------AUUUCaCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.