miRNA display CGI


Results 141 - 160 of 441 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 5' -54.3 NC_005261.1 + 47097 0.66 0.94448
Target:  5'- cGGCA-CGGCugaGGCCUCGgccgcgGCGCg -3'
miRNA:   3'- -CCGUaGUCG---CCGGGGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 47153 0.7 0.78631
Target:  5'- cGGCGUCGGCGGCCgagaccaCCAgcGGGa-CGCc -3'
miRNA:   3'- -CCGUAGUCGCCGG-------GGUauUUCacGCG- -5'
23571 5' -54.3 NC_005261.1 + 47230 0.73 0.594308
Target:  5'- gGGC-UCAGCuggGGCCCCAgAAAGccgaggaccUGCGCc -3'
miRNA:   3'- -CCGuAGUCG---CCGGGGUaUUUC---------ACGCG- -5'
23571 5' -54.3 NC_005261.1 + 47311 0.71 0.718765
Target:  5'- aGCAU-GGCGGCCaCCGgGGAGaagGCGCg -3'
miRNA:   3'- cCGUAgUCGCCGG-GGUaUUUCa--CGCG- -5'
23571 5' -54.3 NC_005261.1 + 47468 0.81 0.251464
Target:  5'- cGGCcUCGGCGGCCUCGggGAAGUcccGCGCc -3'
miRNA:   3'- -CCGuAGUCGCCGGGGUa-UUUCA---CGCG- -5'
23571 5' -54.3 NC_005261.1 + 47714 0.66 0.924266
Target:  5'- cGGCGUCGGgGGCCUCcucg---GCGg -3'
miRNA:   3'- -CCGUAGUCgCCGGGGuauuucaCGCg -5'
23571 5' -54.3 NC_005261.1 + 48788 0.78 0.334535
Target:  5'- cGGCgAUCGcCGGCUCCGUGAGgccGUGCGCg -3'
miRNA:   3'- -CCG-UAGUcGCCGGGGUAUUU---CACGCG- -5'
23571 5' -54.3 NC_005261.1 + 48945 0.68 0.856648
Target:  5'- cGGCGUUGGCGGCCgCCG---GGaaCGCc -3'
miRNA:   3'- -CCGUAGUCGCCGG-GGUauuUCacGCG- -5'
23571 5' -54.3 NC_005261.1 + 49081 0.67 0.900079
Target:  5'- gGGCAcgcgCcGCGGgCCCGcuGAGcGCGCg -3'
miRNA:   3'- -CCGUa---GuCGCCgGGGUauUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 49261 0.72 0.646485
Target:  5'- cGGCGUCGGCGcGCacguCCGcGAGGaagGCGCa -3'
miRNA:   3'- -CCGUAGUCGC-CGg---GGUaUUUCa--CGCG- -5'
23571 5' -54.3 NC_005261.1 + 49452 0.69 0.796524
Target:  5'- cGGCGcCGGCGGCCagggccGAGGaGCGCa -3'
miRNA:   3'- -CCGUaGUCGCCGGggua--UUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 49535 0.67 0.900079
Target:  5'- aGGuCAaCGGCGGCCuucuCCAUGuaaaaguAGUGcCGCa -3'
miRNA:   3'- -CC-GUaGUCGCCGG----GGUAUu------UCAC-GCG- -5'
23571 5' -54.3 NC_005261.1 + 50054 0.67 0.886525
Target:  5'- cGGCGccgcCGGCGucGCCCCGgcccGGcUGCGCg -3'
miRNA:   3'- -CCGUa---GUCGC--CGGGGUauu-UC-ACGCG- -5'
23571 5' -54.3 NC_005261.1 + 50294 0.66 0.929692
Target:  5'- uGGCggCGcGCGGCUCCAggccccGGGUG-GCg -3'
miRNA:   3'- -CCGuaGU-CGCCGGGGUau----UUCACgCG- -5'
23571 5' -54.3 NC_005261.1 + 50485 0.68 0.872034
Target:  5'- cGCGUCcgcGGCGGCCCCca-----GCGCc -3'
miRNA:   3'- cCGUAG---UCGCCGGGGuauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 50572 0.72 0.688061
Target:  5'- uGGCGgu-GCuGCCCCu---GGUGCGCg -3'
miRNA:   3'- -CCGUaguCGcCGGGGuauuUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 51174 0.71 0.738865
Target:  5'- cGGCcgCGGUGGCgCUgcgu-GUGCGCa -3'
miRNA:   3'- -CCGuaGUCGCCGgGGuauuuCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 51782 0.67 0.908993
Target:  5'- cGGCGUCGcccuGCuGGCCguggCCAUGcucgugcugcggcuGGUGCGCg -3'
miRNA:   3'- -CCGUAGU----CG-CCGG----GGUAUu-------------UCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 51888 0.68 0.872034
Target:  5'- cGGCAgCAGCGGCgcgcuacaucgCCCG---GGcGCGCa -3'
miRNA:   3'- -CCGUaGUCGCCG-----------GGGUauuUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 52012 0.72 0.688061
Target:  5'- cGGCAcCGGCuGCCCCGguucg-GCGCg -3'
miRNA:   3'- -CCGUaGUCGcCGGGGUauuucaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.