miRNA display CGI


Results 161 - 180 of 441 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 5' -54.3 NC_005261.1 + 52374 0.67 0.912666
Target:  5'- cGCggCGGCGGCCCCGgucgucAGG-GCcuGCa -3'
miRNA:   3'- cCGuaGUCGCCGGGGUau----UUCaCG--CG- -5'
23571 5' -54.3 NC_005261.1 + 52790 0.67 0.912666
Target:  5'- cGGCG--GGCGGCgCCAacaugucgGAGGcgGCGCg -3'
miRNA:   3'- -CCGUagUCGCCGgGGUa-------UUUCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 52990 0.72 0.63395
Target:  5'- aGGCGggGGCGGCgCCCAggcgucgGCGCa -3'
miRNA:   3'- -CCGUagUCGCCG-GGGUauuuca-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 53212 0.71 0.735873
Target:  5'- gGGCG-CGGCGGCCgcgcgaccccgcggCCGUcaugcacuGGGUGCGCc -3'
miRNA:   3'- -CCGUaGUCGCCGG--------------GGUAu-------UUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 53282 0.77 0.383035
Target:  5'- cGCcUCGGCGGCCgCCGagGAGGUGCuGCg -3'
miRNA:   3'- cCGuAGUCGCCGG-GGUa-UUUCACG-CG- -5'
23571 5' -54.3 NC_005261.1 + 53312 0.66 0.924266
Target:  5'- gGGUcgAUCAGgaGGCCgCAggu-GUGCGCc -3'
miRNA:   3'- -CCG--UAGUCg-CCGGgGUauuuCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 54544 0.66 0.939799
Target:  5'- cGGCGccgccUCGGCGGCgcgcugcgcgCCCA---GGcGCGCg -3'
miRNA:   3'- -CCGU-----AGUCGCCG----------GGGUauuUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 55132 0.7 0.787246
Target:  5'- cGGCggCGGCGGCgCU--GGAG-GCGCu -3'
miRNA:   3'- -CCGuaGUCGCCGgGGuaUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 55201 0.68 0.86445
Target:  5'- cGGCG--AGCGGCCCUcccGGGG-GCGCn -3'
miRNA:   3'- -CCGUagUCGCCGGGGua-UUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 55226 0.74 0.573583
Target:  5'- cGGCGaCGGCGGCUC-----GGUGCGCg -3'
miRNA:   3'- -CCGUaGUCGCCGGGguauuUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 55784 0.66 0.94448
Target:  5'- cGGCAaCGGCGGCgcggggCCGgccGGGG-GCGCg -3'
miRNA:   3'- -CCGUaGUCGCCGg-----GGUa--UUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 55800 0.68 0.86445
Target:  5'- cGGCGcgCGGCcuucGCCgCCGUAAAG-GCGUg -3'
miRNA:   3'- -CCGUa-GUCGc---CGG-GGUAUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 56118 0.66 0.924266
Target:  5'- cGGCGggAGCGcGCCgCAgggcgGGGG-GCGCg -3'
miRNA:   3'- -CCGUagUCGC-CGGgGUa----UUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 56159 0.69 0.796524
Target:  5'- uGGCggCAGCGGCggggCCCGcggGGAGgacgacGCGCg -3'
miRNA:   3'- -CCGuaGUCGCCG----GGGUa--UUUCa-----CGCG- -5'
23571 5' -54.3 NC_005261.1 + 57369 0.68 0.879394
Target:  5'- cGGC-UgAGCGcGCCU---GGGGUGCGCg -3'
miRNA:   3'- -CCGuAgUCGC-CGGGguaUUUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 57638 0.66 0.936871
Target:  5'- uGGC-UCAGCagccgcccgagcacGCCCCcgAGAcUGCGCg -3'
miRNA:   3'- -CCGuAGUCGc-------------CGGGGuaUUUcACGCG- -5'
23571 5' -54.3 NC_005261.1 + 57789 0.67 0.910227
Target:  5'- cGGCGUCGcGCGGCgggcgcgcgaaggCCGUGAAG-GCGa -3'
miRNA:   3'- -CCGUAGU-CGCCGg------------GGUAUUUCaCGCg -5'
23571 5' -54.3 NC_005261.1 + 57945 0.67 0.906495
Target:  5'- cGGCAcCAGCG--CCCGU---GUGCGCa -3'
miRNA:   3'- -CCGUaGUCGCcgGGGUAuuuCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 58695 0.69 0.831999
Target:  5'- gGGcCGUCAGgGcGCgCCGcugaGAGGUGCGCc -3'
miRNA:   3'- -CC-GUAGUCgC-CGgGGUa---UUUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 58978 0.67 0.906495
Target:  5'- cGCGUCGaaGGCCuCCAcGGgcggcGGUGCGCc -3'
miRNA:   3'- cCGUAGUcgCCGG-GGUaUU-----UCACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.