miRNA display CGI


Results 81 - 100 of 441 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 5' -54.3 NC_005261.1 + 109134 0.66 0.93487
Target:  5'- cGGCGUCGGUccccgaguccccGGCCCCcgAGucccuaaauccAGUGUcgGCc -3'
miRNA:   3'- -CCGUAGUCG------------CCGGGGuaUU-----------UCACG--CG- -5'
23571 5' -54.3 NC_005261.1 + 109128 0.76 0.435987
Target:  5'- cGGUGUCGugcGCGGCCCCAggcAG-GCGCc -3'
miRNA:   3'- -CCGUAGU---CGCCGGGGUauuUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 108958 0.66 0.93487
Target:  5'- gGGCGUCAGCagcgGGCCCUcc--AGcgGCGg -3'
miRNA:   3'- -CCGUAGUCG----CCGGGGuauuUCa-CGCg -5'
23571 5' -54.3 NC_005261.1 + 108863 0.66 0.929692
Target:  5'- gGGCAguccCAGaGGCCCUcgcGAGUGuCGCc -3'
miRNA:   3'- -CCGUa---GUCgCCGGGGuauUUCAC-GCG- -5'
23571 5' -54.3 NC_005261.1 + 108362 0.7 0.748774
Target:  5'- uGGCggCAGCGGCgCCGgcgcc-GCGCg -3'
miRNA:   3'- -CCGuaGUCGCCGgGGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 108178 0.68 0.856648
Target:  5'- gGGCGcgCGgccGCGGCUCCGggcgcgAGAGcUGCGCc -3'
miRNA:   3'- -CCGUa-GU---CGCCGGGGUa-----UUUC-ACGCG- -5'
23571 5' -54.3 NC_005261.1 + 108073 0.7 0.758577
Target:  5'- cGGCGggcGCGGCgCCGcUAAGGcGCGCg -3'
miRNA:   3'- -CCGUaguCGCCGgGGU-AUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 108045 0.67 0.906495
Target:  5'- aGCG-CGGCGGCCgCCuc--GGcGCGCa -3'
miRNA:   3'- cCGUaGUCGCCGG-GGuauuUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 107906 0.67 0.893421
Target:  5'- cGCggCcGCGGCCUCGgccacGAGUGcCGCg -3'
miRNA:   3'- cCGuaGuCGCCGGGGUau---UUCAC-GCG- -5'
23571 5' -54.3 NC_005261.1 + 107535 0.72 0.667332
Target:  5'- cGCGUCGGCGGCCaCCAgcacguccgAGAGcacgGCaGCg -3'
miRNA:   3'- cCGUAGUCGCCGG-GGUa--------UUUCa---CG-CG- -5'
23571 5' -54.3 NC_005261.1 + 107331 0.66 0.929692
Target:  5'- gGGCcg-GGCGGCCCCAgcccGAGcucggGCGg -3'
miRNA:   3'- -CCGuagUCGCCGGGGUau--UUCa----CGCg -5'
23571 5' -54.3 NC_005261.1 + 107172 0.7 0.758577
Target:  5'- gGGCAgCGGCGGCuCCCGccgcgcUGGGGacccggcgGCGCg -3'
miRNA:   3'- -CCGUaGUCGCCG-GGGU------AUUUCa-------CGCG- -5'
23571 5' -54.3 NC_005261.1 + 106871 0.68 0.857438
Target:  5'- gGGCGUCcGCGGCCUCGcacuccugcaGCGCc -3'
miRNA:   3'- -CCGUAGuCGCCGGGGUauuuca----CGCG- -5'
23571 5' -54.3 NC_005261.1 + 106545 0.66 0.929692
Target:  5'- cGGC---GGCGGCCgCGUccGGgccgGCGCg -3'
miRNA:   3'- -CCGuagUCGCCGGgGUAuuUCa---CGCG- -5'
23571 5' -54.3 NC_005261.1 + 106307 0.73 0.583927
Target:  5'- cGGCAgagccgcagCGGCGGCgCCCcgggGUAGAGccGCGCg -3'
miRNA:   3'- -CCGUa--------GUCGCCG-GGG----UAUUUCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 106236 0.68 0.879394
Target:  5'- cGCG-CGGCGGCacgggcaCCGc--GGUGCGCg -3'
miRNA:   3'- cCGUaGUCGCCGg------GGUauuUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 106081 0.7 0.748774
Target:  5'- cGGCcgCAGCGGCgcgccgagccCCCAgcgguuGGcgGCGCg -3'
miRNA:   3'- -CCGuaGUCGCCG----------GGGUauu---UCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 105978 0.67 0.912666
Target:  5'- cGGCGU--GCGGCUCCAgca---GCGCg -3'
miRNA:   3'- -CCGUAguCGCCGGGGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 104920 0.67 0.912666
Target:  5'- cGGCggCAGCGGUCCUGgucccgcgacGGGGUGCcCa -3'
miRNA:   3'- -CCGuaGUCGCCGGGGUa---------UUUCACGcG- -5'
23571 5' -54.3 NC_005261.1 + 104850 0.75 0.502745
Target:  5'- cGGCGgcugCGGCGGCCCgCAgcccg-GCGCg -3'
miRNA:   3'- -CCGUa---GUCGCCGGG-GUauuucaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.