miRNA display CGI


Results 121 - 140 of 441 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 5' -54.3 NC_005261.1 + 100206 0.67 0.887225
Target:  5'- uGGCGgcCAGCaGCCCCGcgUAGAGcucggccaccgccggGCGCa -3'
miRNA:   3'- -CCGUa-GUCGcCGGGGU--AUUUCa--------------CGCG- -5'
23571 5' -54.3 NC_005261.1 + 100045 0.66 0.926466
Target:  5'- gGGCGUCAGCucgagcgcgccgccGCCgCCcgGGGGcGCGCc -3'
miRNA:   3'- -CCGUAGUCGc-------------CGG-GGuaUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 99545 0.67 0.91859
Target:  5'- cGCGUCcaGGCGGCgCgCCAgGAAG-GCGUc -3'
miRNA:   3'- cCGUAG--UCGCCG-G-GGUaUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 98746 0.67 0.886525
Target:  5'- gGGCGaucaucguccgCGGCGGgCCCGUuGGG-GCGCc -3'
miRNA:   3'- -CCGUa----------GUCGCCgGGGUAuUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 98698 0.77 0.383035
Target:  5'- gGGCu--GGCGGCCgCGUAGAG-GCGCg -3'
miRNA:   3'- -CCGuagUCGCCGGgGUAUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 98669 0.67 0.91859
Target:  5'- aGGCGagGGCgGGCUCCGccGGGgccggagGCGCg -3'
miRNA:   3'- -CCGUagUCG-CCGGGGUauUUCa------CGCG- -5'
23571 5' -54.3 NC_005261.1 + 98329 0.73 0.62977
Target:  5'- aGCggCGGCGcGCCCCGUGucgacgcgggggcggGGGUGgGCg -3'
miRNA:   3'- cCGuaGUCGC-CGGGGUAU---------------UUCACgCG- -5'
23571 5' -54.3 NC_005261.1 + 98295 0.72 0.667332
Target:  5'- cGCGUCcGCGGCCUCG--GGGgcggGCGCc -3'
miRNA:   3'- cCGUAGuCGCCGGGGUauUUCa---CGCG- -5'
23571 5' -54.3 NC_005261.1 + 98235 0.74 0.542838
Target:  5'- gGGCAUCGauuuccGCGGCCCgGUGcg--GCGCg -3'
miRNA:   3'- -CCGUAGU------CGCCGGGgUAUuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 97534 0.78 0.366359
Target:  5'- cGCgAUCGGCGGCCCCGgc-GGUGCcgGCc -3'
miRNA:   3'- cCG-UAGUCGCCGGGGUauuUCACG--CG- -5'
23571 5' -54.3 NC_005261.1 + 96974 0.67 0.893421
Target:  5'- gGGCGcgauUCAcGCGGCCUCGgcgcggcuAAGcGCGCc -3'
miRNA:   3'- -CCGU----AGU-CGCCGGGGUau------UUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 96028 0.67 0.912666
Target:  5'- gGGCGccCGcGCGGCgCCGUGGAGcggcucGCGCc -3'
miRNA:   3'- -CCGUa-GU-CGCCGgGGUAUUUCa-----CGCG- -5'
23571 5' -54.3 NC_005261.1 + 95598 0.67 0.886525
Target:  5'- cGGCcgCGGCGGCcgagucCCCGcUGGAcuuUGCGCc -3'
miRNA:   3'- -CCGuaGUCGCCG------GGGU-AUUUc--ACGCG- -5'
23571 5' -54.3 NC_005261.1 + 95498 0.68 0.856648
Target:  5'- cGGCAUCGacccGCGGCCauuccgcgCCAUGAugucGGUGaGCu -3'
miRNA:   3'- -CCGUAGU----CGCCGG--------GGUAUU----UCACgCG- -5'
23571 5' -54.3 NC_005261.1 + 95319 0.66 0.929692
Target:  5'- cGCc-CGGCGGCCCCGga----GCGCc -3'
miRNA:   3'- cCGuaGUCGCCGGGGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 94878 0.68 0.848634
Target:  5'- gGGCG--GGCGGCCCgCGUGcAGccacacGCGCg -3'
miRNA:   3'- -CCGUagUCGCCGGG-GUAUuUCa-----CGCG- -5'
23571 5' -54.3 NC_005261.1 + 94393 0.71 0.708595
Target:  5'- cGCggCGGCGGCCuCCucgacGAAGgGCGCg -3'
miRNA:   3'- cCGuaGUCGCCGG-GGua---UUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 94260 0.66 0.929692
Target:  5'- cGGCGcagGGCGGCgCCGcGAGGcucuugGCGCa -3'
miRNA:   3'- -CCGUag-UCGCCGgGGUaUUUCa-----CGCG- -5'
23571 5' -54.3 NC_005261.1 + 94151 0.69 0.793756
Target:  5'- aGCGUCAGCgcccgggucgcgaaGGCgCCCAccagcgUGGcgcGGUGCGCg -3'
miRNA:   3'- cCGUAGUCG--------------CCG-GGGU------AUU---UCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 94038 0.67 0.886525
Target:  5'- cGGCGgccCGGCGcGCCCCccc-AGcgGCGCc -3'
miRNA:   3'- -CCGUa--GUCGC-CGGGGuauuUCa-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.