miRNA display CGI


Results 141 - 160 of 441 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 5' -54.3 NC_005261.1 + 93736 0.67 0.896113
Target:  5'- cGGCAgcgcgcgcuucguacUCGGCGGCCCgCGc---GcGCGCg -3'
miRNA:   3'- -CCGU---------------AGUCGCCGGG-GUauuuCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 93674 0.69 0.823394
Target:  5'- cGCGggCGGCGGCgCCGgcGGG-GCGCc -3'
miRNA:   3'- cCGUa-GUCGCCGgGGUauUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 93451 0.66 0.924266
Target:  5'- uGGCcagCAcCGGCCCCAgcgcGGUGCcgggGCg -3'
miRNA:   3'- -CCGua-GUcGCCGGGGUauu-UCACG----CG- -5'
23571 5' -54.3 NC_005261.1 + 93290 0.68 0.878669
Target:  5'- cGGCAggaugCAGUcgaagaGGCCCgCGUuguuagcGGAGUGUGCc -3'
miRNA:   3'- -CCGUa----GUCG------CCGGG-GUA-------UUUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 93114 0.67 0.917425
Target:  5'- aGCAUCAGCgcgcccgugcccGGCUCCAcgcgcagGCGCg -3'
miRNA:   3'- cCGUAGUCG------------CCGGGGUauuuca-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 92221 0.81 0.222202
Target:  5'- cGGCGUCGuCGGCCCCGccGAGcGCGCg -3'
miRNA:   3'- -CCGUAGUcGCCGGGGUauUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 91546 0.8 0.270501
Target:  5'- uGCcgUGGCGGCCgCCGUGGAGcGCGCg -3'
miRNA:   3'- cCGuaGUCGCCGG-GGUAUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 91007 0.67 0.912666
Target:  5'- gGGCccCAGCuGaGCCCCGgcggcGAGGaGCGCg -3'
miRNA:   3'- -CCGuaGUCG-C-CGGGGUa----UUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 90905 0.69 0.813718
Target:  5'- cGGCAggucUCGGCGGCgcucuuccgcccgCCCAUcaagcucGAGUGCGa -3'
miRNA:   3'- -CCGU----AGUCGCCG-------------GGGUAu------UUCACGCg -5'
23571 5' -54.3 NC_005261.1 + 90840 0.68 0.86445
Target:  5'- cGGgGggCGGCGccGCCCCGacgGuuGUGCGCg -3'
miRNA:   3'- -CCgUa-GUCGC--CGGGGUa--UuuCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 90661 0.7 0.777822
Target:  5'- uGGcCGUC-GCGGCCaCCGUGAcgaccaucGG-GCGCg -3'
miRNA:   3'- -CC-GUAGuCGCCGG-GGUAUU--------UCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 90574 0.66 0.924266
Target:  5'- cGGCGcugCGGCuGGCCgUcgAGgaggacgcGGUGCGCg -3'
miRNA:   3'- -CCGUa--GUCG-CCGGgGuaUU--------UCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 90175 0.69 0.840415
Target:  5'- cGGCGUgGGCcgcgGGCCCCG-AccGcGCGCg -3'
miRNA:   3'- -CCGUAgUCG----CCGGGGUaUuuCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 89352 0.7 0.768263
Target:  5'- cGGCuguUCGGCGGCUgcgccgCCAUGGcccGG-GCGCu -3'
miRNA:   3'- -CCGu--AGUCGCCGG------GGUAUU---UCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 89144 0.67 0.900079
Target:  5'- cGCGcUCAGCGGgCCCGcg----GCGCg -3'
miRNA:   3'- cCGU-AGUCGCCgGGGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 88601 0.66 0.924266
Target:  5'- cGGCc-CGGCGGCgCCAcgGucGUGaCGCu -3'
miRNA:   3'- -CCGuaGUCGCCGgGGUa-UuuCAC-GCG- -5'
23571 5' -54.3 NC_005261.1 + 88180 0.66 0.939799
Target:  5'- gGGCGacgcCGGCGGCgCCGgcGAGgcgggccGCGCc -3'
miRNA:   3'- -CCGUa---GUCGCCGgGGUauUUCa------CGCG- -5'
23571 5' -54.3 NC_005261.1 + 87558 0.66 0.93487
Target:  5'- gGGCGUCAGCuuGGCCgUCAgcccc-GCGCc -3'
miRNA:   3'- -CCGUAGUCG--CCGG-GGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 87445 0.7 0.787246
Target:  5'- cGGCGcCggGGCGGCCgCCGccgcGGUGUGCg -3'
miRNA:   3'- -CCGUaG--UCGCCGG-GGUauu-UCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 86990 0.69 0.796524
Target:  5'- cGGCGcccUC-GUGGCCCuCGUcgaaggccAAGUGCGCg -3'
miRNA:   3'- -CCGU---AGuCGCCGGG-GUAu-------UUCACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.