miRNA display CGI


Results 161 - 180 of 441 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 5' -54.3 NC_005261.1 + 86917 0.78 0.35019
Target:  5'- aGGCggCGGCGGCgCCGgc--GUGCGCg -3'
miRNA:   3'- -CCGuaGUCGCCGgGGUauuuCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 86874 0.66 0.923151
Target:  5'- gGGCG-CGGCGGCCUUGgccgcgcccuGGUccGCGCg -3'
miRNA:   3'- -CCGUaGUCGCCGGGGUauu-------UCA--CGCG- -5'
23571 5' -54.3 NC_005261.1 + 86743 0.66 0.93487
Target:  5'- aGCAUCAggggcGCGGCgCCgGUGAucaGCGCc -3'
miRNA:   3'- cCGUAGU-----CGCCG-GGgUAUUucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 86688 0.67 0.900079
Target:  5'- cGGCga-GGCGGCCCaCGUAc---GCGCc -3'
miRNA:   3'- -CCGuagUCGCCGGG-GUAUuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 86489 0.68 0.847006
Target:  5'- cGGC--CAGCGGCagCCCGggggccugcGUGCGCa -3'
miRNA:   3'- -CCGuaGUCGCCG--GGGUauuu-----CACGCG- -5'
23571 5' -54.3 NC_005261.1 + 86272 0.66 0.94448
Target:  5'- aGCAgcgCGGCGGCgUCGUc-GGUgGCGCc -3'
miRNA:   3'- cCGUa--GUCGCCGgGGUAuuUCA-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 85894 0.66 0.93487
Target:  5'- cGGCAgcgCGGCGGgCgCCAaggacggcgaGGAGUGCGa -3'
miRNA:   3'- -CCGUa--GUCGCCgG-GGUa---------UUUCACGCg -5'
23571 5' -54.3 NC_005261.1 + 85838 0.67 0.886525
Target:  5'- aGCGUguGguUGGCCUCGUAGAGcgccucGCGCa -3'
miRNA:   3'- cCGUAguC--GCCGGGGUAUUUCa-----CGCG- -5'
23571 5' -54.3 NC_005261.1 + 85583 0.66 0.939317
Target:  5'- cGCGaCcGCGGCCuCCGcGAgcgucacggucacGGUGCGCg -3'
miRNA:   3'- cCGUaGuCGCCGG-GGUaUU-------------UCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 85550 0.69 0.814607
Target:  5'- cGGCuccGUCuGCGGCgCCGcGAGGUucgGCGCc -3'
miRNA:   3'- -CCG---UAGuCGCCGgGGUaUUUCA---CGCG- -5'
23571 5' -54.3 NC_005261.1 + 85543 0.73 0.601591
Target:  5'- cGGCAgCGGCgcgcccgcgagcagGGCCCgCucGAAGUGCGCg -3'
miRNA:   3'- -CCGUaGUCG--------------CCGGG-GuaUUUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 85404 0.67 0.91859
Target:  5'- cGGCga-GGCGGCCCUcgAA---GCGCc -3'
miRNA:   3'- -CCGuagUCGCCGGGGuaUUucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 84945 0.67 0.906495
Target:  5'- aGCAccuccUCGGCGGCCgCCG--AGGcgucggGCGCg -3'
miRNA:   3'- cCGU-----AGUCGCCGG-GGUauUUCa-----CGCG- -5'
23571 5' -54.3 NC_005261.1 + 84652 0.68 0.848634
Target:  5'- gGGCGcCGcCGGCCCgCGgccgcuAGUGCGCc -3'
miRNA:   3'- -CCGUaGUcGCCGGG-GUauu---UCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 84270 0.74 0.539791
Target:  5'- cGGCAUggcgcaggugccgcCGGCGGCCCCGgccccGGcgGCGCc -3'
miRNA:   3'- -CCGUA--------------GUCGCCGGGGUauu--UCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 84226 0.68 0.848634
Target:  5'- cGCucgCGGCGGCgCCu----GUGCGCc -3'
miRNA:   3'- cCGua-GUCGCCGgGGuauuuCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 83843 0.69 0.831999
Target:  5'- uGGCGggCcGCGGCCCCGcuGGGcUGgGCc -3'
miRNA:   3'- -CCGUa-GuCGCCGGGGUauUUC-ACgCG- -5'
23571 5' -54.3 NC_005261.1 + 83680 0.67 0.91859
Target:  5'- gGGCGcgCAGCGcGCCgCCG--AGGcgGCGCc -3'
miRNA:   3'- -CCGUa-GUCGC-CGG-GGUauUUCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 83526 0.7 0.767299
Target:  5'- cGGCAc--GCGcccuccaGCCCCAU--GGUGCGCg -3'
miRNA:   3'- -CCGUaguCGC-------CGGGGUAuuUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 83386 0.7 0.774014
Target:  5'- cGGCGagcGCGGCCUCGgccgaggcgagcAGGUGCGCg -3'
miRNA:   3'- -CCGUaguCGCCGGGGUau----------UUCACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.