miRNA display CGI


Results 181 - 200 of 441 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 5' -54.3 NC_005261.1 + 38161 0.71 0.728859
Target:  5'- gGGCG-CGGCGcGCCCCcgGGcggcGGcgGCGCg -3'
miRNA:   3'- -CCGUaGUCGC-CGGGGuaUU----UCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 37303 0.71 0.728859
Target:  5'- gGGCcugCAGCGGCUgCAggcGAcgcucgcggcGGUGCGCg -3'
miRNA:   3'- -CCGua-GUCGCCGGgGUa--UU----------UCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 30412 0.71 0.728859
Target:  5'- aGGCggCGGCGGCCgC-UAGGGccgccGCGCg -3'
miRNA:   3'- -CCGuaGUCGCCGGgGuAUUUCa----CGCG- -5'
23571 5' -54.3 NC_005261.1 + 67283 0.71 0.718765
Target:  5'- cGGCGUCGGCGuuCCCGgcggacGCGCa -3'
miRNA:   3'- -CCGUAGUCGCcgGGGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 127973 0.71 0.718765
Target:  5'- gGGCAgaaGGCgccaGGCCCgCGgcggcGAGUGCGCg -3'
miRNA:   3'- -CCGUag-UCG----CCGGG-GUau---UUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 31232 0.71 0.718765
Target:  5'- uGGCGcUCGGCGGaCCUGgccgacgcGGUGCGCg -3'
miRNA:   3'- -CCGU-AGUCGCCgGGGUauu-----UCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 130624 0.71 0.698357
Target:  5'- aGGCAgaucCAGCGGCCggGUAAGcagGCGCg -3'
miRNA:   3'- -CCGUa---GUCGCCGGggUAUUUca-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 51174 0.71 0.738865
Target:  5'- cGGCcgCGGUGGCgCUgcgu-GUGCGCa -3'
miRNA:   3'- -CCGuaGUCGCCGgGGuauuuCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 106081 0.7 0.748774
Target:  5'- cGGCcgCAGCGGCgcgccgagccCCCAgcgguuGGcgGCGCg -3'
miRNA:   3'- -CCGuaGUCGCCG----------GGGUauu---UCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 108362 0.7 0.748774
Target:  5'- uGGCggCAGCGGCgCCGgcgcc-GCGCg -3'
miRNA:   3'- -CCGuaGUCGCCGgGGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 23242 0.7 0.777822
Target:  5'- gGGCcgCGGCGGCCggcccgCCAaUAAAgacgcGUGUGCa -3'
miRNA:   3'- -CCGuaGUCGCCGG------GGU-AUUU-----CACGCG- -5'
23571 5' -54.3 NC_005261.1 + 3246 0.7 0.774014
Target:  5'- gGGCGcccCGGCGGCCCCGUccucgccgucUGCGUc -3'
miRNA:   3'- -CCGUa--GUCGCCGGGGUAuuuc------ACGCG- -5'
23571 5' -54.3 NC_005261.1 + 89352 0.7 0.768263
Target:  5'- cGGCuguUCGGCGGCUgcgccgCCAUGGcccGG-GCGCu -3'
miRNA:   3'- -CCGu--AGUCGCCGG------GGUAUU---UCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 41892 0.7 0.761495
Target:  5'- gGGCGUCAggugcgcGCGGCCgCgcaggccagucagggCGUcAGGUGCGCg -3'
miRNA:   3'- -CCGUAGU-------CGCCGG-G---------------GUAuUUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 108073 0.7 0.758577
Target:  5'- cGGCGggcGCGGCgCCGcUAAGGcGCGCg -3'
miRNA:   3'- -CCGUaguCGCCGgGGU-AUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 135891 0.7 0.758577
Target:  5'- cGCAgaUC-GCGGaCCCCGaGGAcGUGCGCg -3'
miRNA:   3'- cCGU--AGuCGCC-GGGGUaUUU-CACGCG- -5'
23571 5' -54.3 NC_005261.1 + 107172 0.7 0.758577
Target:  5'- gGGCAgCGGCGGCuCCCGccgcgcUGGGGacccggcgGCGCg -3'
miRNA:   3'- -CCGUaGUCGCCG-GGGU------AUUUCa-------CGCG- -5'
23571 5' -54.3 NC_005261.1 + 79200 0.7 0.758577
Target:  5'- cGCG-CGGCGGCaCCCGUuccuGGcgGCGCc -3'
miRNA:   3'- cCGUaGUCGCCG-GGGUAuu--UCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 33313 0.7 0.758577
Target:  5'- cGGCAaacaUCAccGCGGCCCUggAGGGcguccggGCGCa -3'
miRNA:   3'- -CCGU----AGU--CGCCGGGGuaUUUCa------CGCG- -5'
23571 5' -54.3 NC_005261.1 + 76965 0.7 0.758577
Target:  5'- gGGCAUgGGCacGGCCCCG--GAG-GCGg -3'
miRNA:   3'- -CCGUAgUCG--CCGGGGUauUUCaCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.