miRNA display CGI


Results 81 - 100 of 441 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 5' -54.3 NC_005261.1 + 78832 0.72 0.646485
Target:  5'- cGGCGcCGGCGGCCCgGgcucg-GCGCc -3'
miRNA:   3'- -CCGUaGUCGCCGGGgUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 78000 0.72 0.656919
Target:  5'- cGGCGgaGGCGGCCCU--GGGG-GCGCc -3'
miRNA:   3'- -CCGUagUCGCCGGGGuaUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 42230 0.72 0.677716
Target:  5'- uGCAcgggCAGCaGGUCCCGUAGGGUGuCGg -3'
miRNA:   3'- cCGUa---GUCG-CCGGGGUAUUUCAC-GCg -5'
23571 5' -54.3 NC_005261.1 + 79952 0.72 0.677716
Target:  5'- cGGCG-CGcCGGCCCCGUGA---GCGCg -3'
miRNA:   3'- -CCGUaGUcGCCGGGGUAUUucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 12504 0.72 0.677716
Target:  5'- cGCuugCGGCGGCCCCAgccGAGccCGCg -3'
miRNA:   3'- cCGua-GUCGCCGGGGUau-UUCacGCG- -5'
23571 5' -54.3 NC_005261.1 + 20198 0.72 0.688061
Target:  5'- gGGCGUCgcGGCcgGGCCCCGc---GUGCGUc -3'
miRNA:   3'- -CCGUAG--UCG--CCGGGGUauuuCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 50572 0.72 0.688061
Target:  5'- uGGCGgu-GCuGCCCCu---GGUGCGCg -3'
miRNA:   3'- -CCGUaguCGcCGGGGuauuUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 7589 0.73 0.625591
Target:  5'- cGCGUCGGCGagcgcacgcgcGCCCCGcgcgcuguUGAAG-GCGCa -3'
miRNA:   3'- cCGUAGUCGC-----------CGGGGU--------AUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 59661 0.73 0.625591
Target:  5'- gGGCGaacUCGGCGGUCCCGgc----GCGCg -3'
miRNA:   3'- -CCGU---AGUCGCCGGGGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 35239 0.73 0.625591
Target:  5'- cGCGU-GGCGGCCgCCGUGucGcGCGCg -3'
miRNA:   3'- cCGUAgUCGCCGG-GGUAUuuCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 55226 0.74 0.573583
Target:  5'- cGGCGaCGGCGGCUC-----GGUGCGCg -3'
miRNA:   3'- -CCGUaGUCGCCGGGguauuUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 78890 0.73 0.583927
Target:  5'- uGGCGaCGGCGGCgaCCCGgcGGGcGCGCa -3'
miRNA:   3'- -CCGUaGUCGCCG--GGGUauUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 106307 0.73 0.583927
Target:  5'- cGGCAgagccgcagCGGCGGCgCCCcgggGUAGAGccGCGCg -3'
miRNA:   3'- -CCGUa--------GUCGCCG-GGG----UAUUUCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 117974 0.73 0.583927
Target:  5'- cGGCGguUCu-CGGCgCCCAUGGAGcGCGCg -3'
miRNA:   3'- -CCGU--AGucGCCG-GGGUAUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 43500 0.73 0.594308
Target:  5'- cGGCGUCGGUGuccccGCCCCG-GAGGUagcgGCGCu -3'
miRNA:   3'- -CCGUAGUCGC-----CGGGGUaUUUCA----CGCG- -5'
23571 5' -54.3 NC_005261.1 + 135981 0.73 0.594308
Target:  5'- aGCGcCGGCGGCCUgaGUGGccgccGGUGCGCg -3'
miRNA:   3'- cCGUaGUCGCCGGGg-UAUU-----UCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 85543 0.73 0.601591
Target:  5'- cGGCAgCGGCgcgcccgcgagcagGGCCCgCucGAAGUGCGCg -3'
miRNA:   3'- -CCGUaGUCG--------------CCGGG-GuaUUUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 33057 0.73 0.615147
Target:  5'- cGGCggCGGCgGGCCCCGUGgacgccgcccucGAGccgcgaggaccUGCGCg -3'
miRNA:   3'- -CCGuaGUCG-CCGGGGUAU------------UUC-----------ACGCG- -5'
23571 5' -54.3 NC_005261.1 + 134863 0.73 0.615147
Target:  5'- cGGCcgCGcucGCGGCCCU--GAAGgccgGCGCg -3'
miRNA:   3'- -CCGuaGU---CGCCGGGGuaUUUCa---CGCG- -5'
23571 5' -54.3 NC_005261.1 + 32903 0.72 0.688061
Target:  5'- uGGCgGUgGGCGGCgCCGgggcGGAGUGCGa -3'
miRNA:   3'- -CCG-UAgUCGCCGgGGUa---UUUCACGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.