miRNA display CGI


Results 101 - 120 of 441 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 5' -54.3 NC_005261.1 + 67283 0.71 0.718765
Target:  5'- cGGCGUCGGCGuuCCCGgcggacGCGCa -3'
miRNA:   3'- -CCGUAGUCGCcgGGGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 30412 0.71 0.728859
Target:  5'- aGGCggCGGCGGCCgC-UAGGGccgccGCGCg -3'
miRNA:   3'- -CCGuaGUCGCCGGgGuAUUUCa----CGCG- -5'
23571 5' -54.3 NC_005261.1 + 37303 0.71 0.728859
Target:  5'- gGGCcugCAGCGGCUgCAggcGAcgcucgcggcGGUGCGCg -3'
miRNA:   3'- -CCGua-GUCGCCGGgGUa--UU----------UCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 38161 0.71 0.728859
Target:  5'- gGGCG-CGGCGcGCCCCcgGGcggcGGcgGCGCg -3'
miRNA:   3'- -CCGUaGUCGC-CGGGGuaUU----UCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 121184 0.71 0.728859
Target:  5'- cGGCcgCgAGCaGCCCgucGAGGUGCGCu -3'
miRNA:   3'- -CCGuaG-UCGcCGGGguaUUUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 79952 0.72 0.677716
Target:  5'- cGGCG-CGcCGGCCCCGUGA---GCGCg -3'
miRNA:   3'- -CCGUaGUcGCCGGGGUAUUucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 42230 0.72 0.677716
Target:  5'- uGCAcgggCAGCaGGUCCCGUAGGGUGuCGg -3'
miRNA:   3'- cCGUa---GUCG-CCGGGGUAUUUCAC-GCg -5'
23571 5' -54.3 NC_005261.1 + 43500 0.73 0.594308
Target:  5'- cGGCGUCGGUGuccccGCCCCG-GAGGUagcgGCGCu -3'
miRNA:   3'- -CCGUAGUCGC-----CGGGGUaUUUCA----CGCG- -5'
23571 5' -54.3 NC_005261.1 + 135981 0.73 0.594308
Target:  5'- aGCGcCGGCGGCCUgaGUGGccgccGGUGCGCg -3'
miRNA:   3'- cCGUaGUCGCCGGGg-UAUU-----UCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 85543 0.73 0.601591
Target:  5'- cGGCAgCGGCgcgcccgcgagcagGGCCCgCucGAAGUGCGCg -3'
miRNA:   3'- -CCGUaGUCG--------------CCGGG-GuaUUUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 33057 0.73 0.615147
Target:  5'- cGGCggCGGCgGGCCCCGUGgacgccgcccucGAGccgcgaggaccUGCGCg -3'
miRNA:   3'- -CCGuaGUCG-CCGGGGUAU------------UUC-----------ACGCG- -5'
23571 5' -54.3 NC_005261.1 + 134863 0.73 0.615147
Target:  5'- cGGCcgCGcucGCGGCCCU--GAAGgccgGCGCg -3'
miRNA:   3'- -CCGuaGU---CGCCGGGGuaUUUCa---CGCG- -5'
23571 5' -54.3 NC_005261.1 + 35239 0.73 0.625591
Target:  5'- cGCGU-GGCGGCCgCCGUGucGcGCGCg -3'
miRNA:   3'- cCGUAgUCGCCGG-GGUAUuuCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 59661 0.73 0.625591
Target:  5'- gGGCGaacUCGGCGGUCCCGgc----GCGCg -3'
miRNA:   3'- -CCGU---AGUCGCCGGGGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 7589 0.73 0.625591
Target:  5'- cGCGUCGGCGagcgcacgcgcGCCCCGcgcgcuguUGAAG-GCGCa -3'
miRNA:   3'- cCGUAGUCGC-----------CGGGGU--------AUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 121978 0.72 0.63604
Target:  5'- cGGCccCGGCGGCCCCg------GCGCg -3'
miRNA:   3'- -CCGuaGUCGCCGGGGuauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 558 0.72 0.646485
Target:  5'- gGGCgGUgGGgGGCCCCG--GGGUcGCGCg -3'
miRNA:   3'- -CCG-UAgUCgCCGGGGUauUUCA-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 122846 0.72 0.646485
Target:  5'- cGGCAUCgacGGCGGCgCCG--AGG-GCGCc -3'
miRNA:   3'- -CCGUAG---UCGCCGgGGUauUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 78832 0.72 0.646485
Target:  5'- cGGCGcCGGCGGCCCgGgcucg-GCGCc -3'
miRNA:   3'- -CCGUaGUCGCCGGGgUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 78000 0.72 0.656919
Target:  5'- cGGCGgaGGCGGCCCU--GGGG-GCGCc -3'
miRNA:   3'- -CCGUagUCGCCGGGGuaUUUCaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.