miRNA display CGI


Results 141 - 160 of 441 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 5' -54.3 NC_005261.1 + 81309 0.71 0.738865
Target:  5'- gGGC-UCAGUGGCCUUGcGGAuGUGUGCc -3'
miRNA:   3'- -CCGuAGUCGCCGGGGUaUUU-CACGCG- -5'
23571 5' -54.3 NC_005261.1 + 53212 0.71 0.735873
Target:  5'- gGGCG-CGGCGGCCgcgcgaccccgcggCCGUcaugcacuGGGUGCGCc -3'
miRNA:   3'- -CCGUaGUCGCCGG--------------GGUAu-------UUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 50572 0.72 0.688061
Target:  5'- uGGCGgu-GCuGCCCCu---GGUGCGCg -3'
miRNA:   3'- -CCGUaguCGcCGGGGuauuUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 20198 0.72 0.688061
Target:  5'- gGGCGUCgcGGCcgGGCCCCGc---GUGCGUc -3'
miRNA:   3'- -CCGUAG--UCG--CCGGGGUauuuCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 12504 0.72 0.677716
Target:  5'- cGCuugCGGCGGCCCCAgccGAGccCGCg -3'
miRNA:   3'- cCGua-GUCGCCGGGGUau-UUCacGCG- -5'
23571 5' -54.3 NC_005261.1 + 79952 0.72 0.677716
Target:  5'- cGGCG-CGcCGGCCCCGUGA---GCGCg -3'
miRNA:   3'- -CCGUaGUcGCCGGGGUAUUucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 42230 0.72 0.677716
Target:  5'- uGCAcgggCAGCaGGUCCCGUAGGGUGuCGg -3'
miRNA:   3'- cCGUa---GUCG-CCGGGGUAUUUCAC-GCg -5'
23571 5' -54.3 NC_005261.1 + 78000 0.72 0.656919
Target:  5'- cGGCGgaGGCGGCCCU--GGGG-GCGCc -3'
miRNA:   3'- -CCGUagUCGCCGGGGuaUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 78832 0.72 0.646485
Target:  5'- cGGCGcCGGCGGCCCgGgcucg-GCGCc -3'
miRNA:   3'- -CCGUaGUCGCCGGGgUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 122846 0.72 0.646485
Target:  5'- cGGCAUCgacGGCGGCgCCG--AGG-GCGCc -3'
miRNA:   3'- -CCGUAG---UCGCCGgGGUauUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 32903 0.72 0.688061
Target:  5'- uGGCgGUgGGCGGCgCCGgggcGGAGUGCGa -3'
miRNA:   3'- -CCG-UAgUCGCCGgGGUa---UUUCACGCg -5'
23571 5' -54.3 NC_005261.1 + 52012 0.72 0.688061
Target:  5'- cGGCAcCGGCuGCCCCGguucg-GCGCg -3'
miRNA:   3'- -CCGUaGUCGcCGGGGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 121184 0.71 0.728859
Target:  5'- cGGCcgCgAGCaGCCCgucGAGGUGCGCu -3'
miRNA:   3'- -CCGuaG-UCGcCGGGguaUUUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 38161 0.71 0.728859
Target:  5'- gGGCG-CGGCGcGCCCCcgGGcggcGGcgGCGCg -3'
miRNA:   3'- -CCGUaGUCGC-CGGGGuaUU----UCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 37303 0.71 0.728859
Target:  5'- gGGCcugCAGCGGCUgCAggcGAcgcucgcggcGGUGCGCg -3'
miRNA:   3'- -CCGua-GUCGCCGGgGUa--UU----------UCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 30412 0.71 0.728859
Target:  5'- aGGCggCGGCGGCCgC-UAGGGccgccGCGCg -3'
miRNA:   3'- -CCGuaGUCGCCGGgGuAUUUCa----CGCG- -5'
23571 5' -54.3 NC_005261.1 + 67283 0.71 0.718765
Target:  5'- cGGCGUCGGCGuuCCCGgcggacGCGCa -3'
miRNA:   3'- -CCGUAGUCGCcgGGGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 127973 0.71 0.718765
Target:  5'- gGGCAgaaGGCgccaGGCCCgCGgcggcGAGUGCGCg -3'
miRNA:   3'- -CCGUag-UCG----CCGGG-GUau---UUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 31232 0.71 0.718765
Target:  5'- uGGCGcUCGGCGGaCCUGgccgacgcGGUGCGCg -3'
miRNA:   3'- -CCGU-AGUCGCCgGGGUauu-----UCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 130624 0.71 0.698357
Target:  5'- aGGCAgaucCAGCGGCCggGUAAGcagGCGCg -3'
miRNA:   3'- -CCGUa---GUCGCCGGggUAUUUca-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.