miRNA display CGI


Results 121 - 140 of 441 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 5' -54.3 NC_005261.1 + 87558 0.66 0.93487
Target:  5'- gGGCGUCAGCuuGGCCgUCAgcccc-GCGCc -3'
miRNA:   3'- -CCGUAGUCG--CCGG-GGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 4441 0.66 0.93487
Target:  5'- gGGCGUCAGCagcgGGCCCUcc--AGcgGCGg -3'
miRNA:   3'- -CCGUAGUCG----CCGGGGuauuUCa-CGCg -5'
23571 5' -54.3 NC_005261.1 + 73913 0.68 0.879394
Target:  5'- uGCAgagcCGGCGGCCCgAcugcGUGUGCc -3'
miRNA:   3'- cCGUa---GUCGCCGGGgUauuuCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 103722 0.68 0.882275
Target:  5'- cGGCGUCuagcuccuucuuggcGGCGGCgCCCuccgccUGCGCc -3'
miRNA:   3'- -CCGUAG---------------UCGCCG-GGGuauuucACGCG- -5'
23571 5' -54.3 NC_005261.1 + 94038 0.67 0.886525
Target:  5'- cGGCGgccCGGCGcGCCCCccc-AGcgGCGCc -3'
miRNA:   3'- -CCGUa--GUCGC-CGGGGuauuUCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 19565 0.66 0.929692
Target:  5'- aGCGcCAGCGGgcgguugauuCUCCA-GAGGUGCGUg -3'
miRNA:   3'- cCGUaGUCGCC----------GGGGUaUUUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 100045 0.66 0.926466
Target:  5'- gGGCGUCAGCucgagcgcgccgccGCCgCCcgGGGGcGCGCc -3'
miRNA:   3'- -CCGUAGUCGc-------------CGG-GGuaUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 56118 0.66 0.924266
Target:  5'- cGGCGggAGCGcGCCgCAgggcgGGGG-GCGCg -3'
miRNA:   3'- -CCGUagUCGC-CGGgGUa----UUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 43378 0.66 0.924266
Target:  5'- cGGCAUCGGCcucgcggugccGGCaCCGUccAG-GCGCc -3'
miRNA:   3'- -CCGUAGUCG-----------CCGgGGUAuuUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 122588 0.67 0.91859
Target:  5'- cGCcgCAGCGGCCUUGUAcgccGCGUu -3'
miRNA:   3'- cCGuaGUCGCCGGGGUAUuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 98669 0.67 0.91859
Target:  5'- aGGCGagGGCgGGCUCCGccGGGgccggagGCGCg -3'
miRNA:   3'- -CCGUagUCG-CCGGGGUauUUCa------CGCG- -5'
23571 5' -54.3 NC_005261.1 + 65399 0.67 0.91625
Target:  5'- cGGguUgGGCGGCCCCGgcagcuccacGUcCGCg -3'
miRNA:   3'- -CCguAgUCGCCGGGGUauuu------CAcGCG- -5'
23571 5' -54.3 NC_005261.1 + 118060 0.67 0.912666
Target:  5'- uGGCGgccgcggCAGCGGCCgCAgcc---GCGCu -3'
miRNA:   3'- -CCGUa------GUCGCCGGgGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 51782 0.67 0.908993
Target:  5'- cGGCGUCGcccuGCuGGCCguggCCAUGcucgugcugcggcuGGUGCGCg -3'
miRNA:   3'- -CCGUAGU----CG-CCGG----GGUAUu-------------UCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 125873 0.67 0.906495
Target:  5'- cGGCcggGGCGGCgCCCuuggcUGAAG-GCGCc -3'
miRNA:   3'- -CCGuagUCGCCG-GGGu----AUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 111692 0.67 0.906495
Target:  5'- cGGCgauGUC-GUGGaCCgCAUGAAG-GCGCa -3'
miRNA:   3'- -CCG---UAGuCGCC-GGgGUAUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 8557 0.67 0.906495
Target:  5'- cGC-UCGGCcGCCCCGgGAAGUGaggaCGCu -3'
miRNA:   3'- cCGuAGUCGcCGGGGUaUUUCAC----GCG- -5'
23571 5' -54.3 NC_005261.1 + 121668 0.67 0.900079
Target:  5'- cGCGUCGGCguagguguaGGCgCCCuccAGGuUGCGCa -3'
miRNA:   3'- cCGUAGUCG---------CCG-GGGuauUUC-ACGCG- -5'
23571 5' -54.3 NC_005261.1 + 93736 0.67 0.896113
Target:  5'- cGGCAgcgcgcgcuucguacUCGGCGGCCCgCGc---GcGCGCg -3'
miRNA:   3'- -CCGU---------------AGUCGCCGGG-GUauuuCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 96974 0.67 0.893421
Target:  5'- gGGCGcgauUCAcGCGGCCUCGgcgcggcuAAGcGCGCc -3'
miRNA:   3'- -CCGU----AGU-CGCCGGGGUau------UUCaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.