miRNA display CGI


Results 141 - 160 of 441 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 5' -54.3 NC_005261.1 + 127684 0.69 0.796524
Target:  5'- cGGCGgccgcugcccCGGCGGCgCCGgagGAGcUGCGCg -3'
miRNA:   3'- -CCGUa---------GUCGCCGgGGUau-UUC-ACGCG- -5'
23571 5' -54.3 NC_005261.1 + 20566 0.69 0.814607
Target:  5'- gGGCugcgCAGCGGCgCCGgcg---GCGCg -3'
miRNA:   3'- -CCGua--GUCGCCGgGGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 70340 0.68 0.879394
Target:  5'- cGCGUCgAGCGGgCCgGggaccgGGAGgcgGCGCg -3'
miRNA:   3'- cCGUAG-UCGCCgGGgUa-----UUUCa--CGCG- -5'
23571 5' -54.3 NC_005261.1 + 73462 0.68 0.879394
Target:  5'- cGCGUCcGCGcGCCCCcccuGGgccgcgGCGCg -3'
miRNA:   3'- cCGUAGuCGC-CGGGGuauuUCa-----CGCG- -5'
23571 5' -54.3 NC_005261.1 + 100206 0.67 0.887225
Target:  5'- uGGCGgcCAGCaGCCCCGcgUAGAGcucggccaccgccggGCGCa -3'
miRNA:   3'- -CCGUa-GUCGcCGGGGU--AUUUCa--------------CGCG- -5'
23571 5' -54.3 NC_005261.1 + 96974 0.67 0.893421
Target:  5'- gGGCGcgauUCAcGCGGCCUCGgcgcggcuAAGcGCGCc -3'
miRNA:   3'- -CCGU----AGU-CGCCGGGGUau------UUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 49081 0.67 0.900079
Target:  5'- gGGCAcgcgCcGCGGgCCCGcuGAGcGCGCg -3'
miRNA:   3'- -CCGUa---GuCGCCgGGGUauUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 121668 0.67 0.900079
Target:  5'- cGCGUCGGCguagguguaGGCgCCCuccAGGuUGCGCa -3'
miRNA:   3'- cCGUAGUCG---------CCG-GGGuauUUC-ACGCG- -5'
23571 5' -54.3 NC_005261.1 + 35714 0.67 0.906495
Target:  5'- gGGCucggUGGCGGCCCCGgccGAGGccaccUGgGCc -3'
miRNA:   3'- -CCGua--GUCGCCGGGGUa--UUUC-----ACgCG- -5'
23571 5' -54.3 NC_005261.1 + 66932 0.67 0.906495
Target:  5'- gGGCGUCgaaGGCGGCCgCGUAcAG-GcCGUu -3'
miRNA:   3'- -CCGUAG---UCGCCGGgGUAUuUCaC-GCG- -5'
23571 5' -54.3 NC_005261.1 + 93290 0.68 0.878669
Target:  5'- cGGCAggaugCAGUcgaagaGGCCCgCGUuguuagcGGAGUGUGCc -3'
miRNA:   3'- -CCGUa----GUCG------CCGGG-GUA-------UUUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 75826 0.68 0.872034
Target:  5'- cGGCG-CGGCcGCgCCCGgGGAGggGCGCg -3'
miRNA:   3'- -CCGUaGUCGcCG-GGGUaUUUCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 22058 0.69 0.831999
Target:  5'- gGGguUCAGgGGCUCCGgcggggcucGAGGggGCGCc -3'
miRNA:   3'- -CCguAGUCgCCGGGGUa--------UUUCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 112067 0.69 0.831999
Target:  5'- gGGCgugcccucGUCGGCgagGGCgCCAcguGGUGCGCg -3'
miRNA:   3'- -CCG--------UAGUCG---CCGgGGUauuUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 74818 0.69 0.837911
Target:  5'- uGGCGgaGGUGGCCgCCGUGcucgcggaccugggGAGgcgGCGCg -3'
miRNA:   3'- -CCGUagUCGCCGG-GGUAU--------------UUCa--CGCG- -5'
23571 5' -54.3 NC_005261.1 + 4671 0.69 0.840415
Target:  5'- cGGCggCGGCGGCCCCc----GUGUc- -3'
miRNA:   3'- -CCGuaGUCGCCGGGGuauuuCACGcg -5'
23571 5' -54.3 NC_005261.1 + 103872 0.68 0.848634
Target:  5'- cGGCGg-GGCGGCgCCGccGGGcgGCGCg -3'
miRNA:   3'- -CCGUagUCGCCGgGGUauUUCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 108178 0.68 0.856648
Target:  5'- gGGCGcgCGgccGCGGCUCCGggcgcgAGAGcUGCGCc -3'
miRNA:   3'- -CCGUa-GU---CGCCGGGGUa-----UUUC-ACGCG- -5'
23571 5' -54.3 NC_005261.1 + 120407 0.68 0.86368
Target:  5'- cGGCGUCugcgcugAGCGGCCUgGgcuGGUgaacauGCGCg -3'
miRNA:   3'- -CCGUAG-------UCGCCGGGgUauuUCA------CGCG- -5'
23571 5' -54.3 NC_005261.1 + 44212 0.68 0.86445
Target:  5'- uGCA--GGCGGCCCg--GGAGcGCGCg -3'
miRNA:   3'- cCGUagUCGCCGGGguaUUUCaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.