miRNA display CGI


Results 161 - 180 of 441 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 5' -54.3 NC_005261.1 + 85550 0.69 0.814607
Target:  5'- cGGCuccGUCuGCGGCgCCGcGAGGUucgGCGCc -3'
miRNA:   3'- -CCG---UAGuCGCCGgGGUaUUUCA---CGCG- -5'
23571 5' -54.3 NC_005261.1 + 121389 0.69 0.823394
Target:  5'- cGCggCGGCGGCgCCugcccGAGUGCGa -3'
miRNA:   3'- cCGuaGUCGCCGgGGuau--UUCACGCg -5'
23571 5' -54.3 NC_005261.1 + 112067 0.69 0.831999
Target:  5'- gGGCgugcccucGUCGGCgagGGCgCCAcguGGUGCGCg -3'
miRNA:   3'- -CCG--------UAGUCG---CCGgGGUauuUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 127637 0.69 0.831999
Target:  5'- cGCGacggCGGCGGCgCCGgGGGGcGCGCg -3'
miRNA:   3'- cCGUa---GUCGCCGgGGUaUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 22662 0.69 0.840415
Target:  5'- cGGCGccUgGGCGGCgCCCG---AGUGcCGCc -3'
miRNA:   3'- -CCGU--AgUCGCCG-GGGUauuUCAC-GCG- -5'
23571 5' -54.3 NC_005261.1 + 115850 0.68 0.848634
Target:  5'- uGGCccgcGCGGCCCCcgccGAG-GCGCg -3'
miRNA:   3'- -CCGuaguCGCCGGGGuau-UUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 100958 0.68 0.856648
Target:  5'- cGGCG-CGcGCGGUCUCGUgGAAG-GCGCc -3'
miRNA:   3'- -CCGUaGU-CGCCGGGGUA-UUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 106871 0.68 0.857438
Target:  5'- gGGCGUCcGCGGCCUCGcacuccugcaGCGCc -3'
miRNA:   3'- -CCGUAGuCGCCGGGGUauuuca----CGCG- -5'
23571 5' -54.3 NC_005261.1 + 69555 0.68 0.871286
Target:  5'- uGGgGaCGGCGGCCCCcuacgucacccucAUAGAG-GCGg -3'
miRNA:   3'- -CCgUaGUCGCCGGGG-------------UAUUUCaCGCg -5'
23571 5' -54.3 NC_005261.1 + 104526 0.69 0.796524
Target:  5'- cGCGaCGGCGGCCgCCAcc-AG-GCGCa -3'
miRNA:   3'- cCGUaGUCGCCGG-GGUauuUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 76460 0.69 0.796524
Target:  5'- cGGCGaCGGCGGCgCCGgcgcGcGCGCg -3'
miRNA:   3'- -CCGUaGUCGCCGgGGUauuuCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 85583 0.66 0.939317
Target:  5'- cGCGaCcGCGGCCuCCGcGAgcgucacggucacGGUGCGCg -3'
miRNA:   3'- cCGUaGuCGCCGG-GGUaUU-------------UCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 102288 0.66 0.939799
Target:  5'- cGCGcCAGCGGCCgCGggucguAGccGCGCg -3'
miRNA:   3'- cCGUaGUCGCCGGgGUauu---UCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 5514 0.66 0.94448
Target:  5'- cGGCAgcggCGGCgaGGCCgCCGgcuucgGCGCg -3'
miRNA:   3'- -CCGUa---GUCG--CCGG-GGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 1564 0.7 0.748774
Target:  5'- cGGCcgCAGCGGCgcgccgagccCCCAgcgguuGGcgGCGCg -3'
miRNA:   3'- -CCGuaGUCGCCG----------GGGUauu---UCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 74065 0.7 0.748774
Target:  5'- cGGCAgcugCGcgacGCGGCCCgGcuu-GUGCGCg -3'
miRNA:   3'- -CCGUa---GU----CGCCGGGgUauuuCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 3556 0.7 0.758577
Target:  5'- cGGCGggcGCGGCgCCGcUAAGGcGCGCg -3'
miRNA:   3'- -CCGUaguCGCCGgGGU-AUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 34459 0.7 0.768263
Target:  5'- gGGCAcgggcCGGgGGCCCCGUAccugcggcGGGUGCu- -3'
miRNA:   3'- -CCGUa----GUCgCCGGGGUAU--------UUCACGcg -5'
23571 5' -54.3 NC_005261.1 + 47153 0.7 0.78631
Target:  5'- cGGCGUCGGCGGCCgagaccaCCAgcGGGa-CGCc -3'
miRNA:   3'- -CCGUAGUCGCCGG-------GGUauUUCacGCG- -5'
23571 5' -54.3 NC_005261.1 + 43278 0.7 0.787246
Target:  5'- gGGCGUC-GCGGCCgCCuuucccgcgGGGG-GCGCc -3'
miRNA:   3'- -CCGUAGuCGCCGG-GGua-------UUUCaCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.