miRNA display CGI


Results 1 - 20 of 441 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 5' -54.3 NC_005261.1 + 138074 0.67 0.912666
Target:  5'- cGGCggCAGCGGUCCUGgucccgcgacGGGGUGCcCa -3'
miRNA:   3'- -CCGuaGUCGCCGGGGUa---------UUUCACGcG- -5'
23571 5' -54.3 NC_005261.1 + 138031 0.66 0.929692
Target:  5'- gGGCggCGGCGGCaccgcuggCCCcgGGAGcaccagggGCGCc -3'
miRNA:   3'- -CCGuaGUCGCCG--------GGGuaUUUCa-------CGCG- -5'
23571 5' -54.3 NC_005261.1 + 138004 0.75 0.502745
Target:  5'- cGGCGgcugCGGCGGCCCgCAgcccg-GCGCg -3'
miRNA:   3'- -CCGUa---GUCGCCGGG-GUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 137036 0.66 0.924266
Target:  5'- cGGCGUCGGUGGagggcggaCCGUcggcaggcgcGGAG-GCGCg -3'
miRNA:   3'- -CCGUAGUCGCCgg------GGUA----------UUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 136906 0.69 0.840415
Target:  5'- cGGCG-CGGCGGCguCCCG--GAGcGCGUg -3'
miRNA:   3'- -CCGUaGUCGCCG--GGGUauUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 136877 0.66 0.94448
Target:  5'- uGGCGUaGGCGcGgCCgAUGAAGUGUacugGCg -3'
miRNA:   3'- -CCGUAgUCGC-CgGGgUAUUUCACG----CG- -5'
23571 5' -54.3 NC_005261.1 + 136457 0.7 0.748774
Target:  5'- gGGCAcgCGGCaGCCCCAgacuc-GCGCg -3'
miRNA:   3'- -CCGUa-GUCGcCGGGGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 136454 0.67 0.91859
Target:  5'- cGGCucugCcGCGGCgCCAac--GUGCGCu -3'
miRNA:   3'- -CCGua--GuCGCCGgGGUauuuCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 135981 0.73 0.594308
Target:  5'- aGCGcCGGCGGCCUgaGUGGccgccGGUGCGCg -3'
miRNA:   3'- cCGUaGUCGCCGGGg-UAUU-----UCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 135891 0.7 0.758577
Target:  5'- cGCAgaUC-GCGGaCCCCGaGGAcGUGCGCg -3'
miRNA:   3'- cCGU--AGuCGCC-GGGGUaUUU-CACGCG- -5'
23571 5' -54.3 NC_005261.1 + 135659 0.68 0.879394
Target:  5'- gGGCGcgGGCGGCCCUcgcucGAGGagcucUGCGCc -3'
miRNA:   3'- -CCGUagUCGCCGGGGua---UUUC-----ACGCG- -5'
23571 5' -54.3 NC_005261.1 + 134863 0.73 0.615147
Target:  5'- cGGCcgCGcucGCGGCCCU--GAAGgccgGCGCg -3'
miRNA:   3'- -CCGuaGU---CGCCGGGGuaUUUCa---CGCG- -5'
23571 5' -54.3 NC_005261.1 + 134783 0.66 0.94448
Target:  5'- cGGCG-CGGCGGCCC--------GCGCg -3'
miRNA:   3'- -CCGUaGUCGCCGGGguauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 134391 0.68 0.86445
Target:  5'- cGGCGagAGCGGgaUCAggAAGGUGUGCg -3'
miRNA:   3'- -CCGUagUCGCCggGGUa-UUUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 133100 0.67 0.906495
Target:  5'- aGGCcgccGUCAaccgcGCGGCCuuCCAcGgcGUGCGCg -3'
miRNA:   3'- -CCG----UAGU-----CGCCGG--GGUaUuuCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 132721 0.68 0.869782
Target:  5'- cGGCcUCGccgccgugccGCGGCCCCAgcuaccccccgGCGCg -3'
miRNA:   3'- -CCGuAGU----------CGCCGGGGUauuuca-----CGCG- -5'
23571 5' -54.3 NC_005261.1 + 132717 0.69 0.792831
Target:  5'- cGGCGcccuaccucauugCGGCGGCCCCGcacucAAGGgcaucGCGCg -3'
miRNA:   3'- -CCGUa------------GUCGCCGGGGUa----UUUCa----CGCG- -5'
23571 5' -54.3 NC_005261.1 + 132646 0.75 0.489015
Target:  5'- gGGCG-CGGCGGCCCUAgcggccgcguguGGGUGCGa -3'
miRNA:   3'- -CCGUaGUCGCCGGGGUau----------UUCACGCg -5'
23571 5' -54.3 NC_005261.1 + 130624 0.71 0.698357
Target:  5'- aGGCAgaucCAGCGGCCggGUAAGcagGCGCg -3'
miRNA:   3'- -CCGUa---GUCGCCGGggUAUUUca-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 130481 0.67 0.900079
Target:  5'- cGGCGugccUCGGCggcgagGGCCCCGacGAcGUGgCGCa -3'
miRNA:   3'- -CCGU----AGUCG------CCGGGGUauUU-CAC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.