miRNA display CGI


Results 1 - 20 of 441 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 5' -54.3 NC_005261.1 + 136877 0.66 0.94448
Target:  5'- uGGCGUaGGCGcGgCCgAUGAAGUGUacugGCg -3'
miRNA:   3'- -CCGUAgUCGC-CgGGgUAUUUCACG----CG- -5'
23571 5' -54.3 NC_005261.1 + 103956 0.66 0.93487
Target:  5'- cGGCGcgaccgCGGCGGCCgCCAcacgGAA--GCGCu -3'
miRNA:   3'- -CCGUa-----GUCGCCGG-GGUa---UUUcaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 4617 0.66 0.93487
Target:  5'- cGGCGUCGGUccccgaguccccGGCCCCcgAGucccuaaauccAGUGUcgGCc -3'
miRNA:   3'- -CCGUAGUCG------------CCGGGGuaUU-----------UCACG--CG- -5'
23571 5' -54.3 NC_005261.1 + 122012 1.15 0.001511
Target:  5'- uGGCAUCAGCGGCCCCAUAAAGUGCGCg -3'
miRNA:   3'- -CCGUAGUCGCCGGGGUAUUUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 120075 0.66 0.94448
Target:  5'- cGCAaCGGCuaCCCCGUGGAGgcucggcacGCGCg -3'
miRNA:   3'- cCGUaGUCGccGGGGUAUUUCa--------CGCG- -5'
23571 5' -54.3 NC_005261.1 + 77445 0.66 0.94448
Target:  5'- uGGuCGUCAGCcaGGCCCgGg-----GCGCg -3'
miRNA:   3'- -CC-GUAGUCG--CCGGGgUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 82009 0.66 0.941701
Target:  5'- -cCGUCgaagAGCGGCCCguUGAcgaggucgaagaacuGGUGCGUc -3'
miRNA:   3'- ccGUAG----UCGCCGGGguAUU---------------UCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 102795 0.66 0.939799
Target:  5'- cGGCcgCGagcGCGGCgCCCAgccgccGCGCg -3'
miRNA:   3'- -CCGuaGU---CGCCG-GGGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 115541 0.66 0.939799
Target:  5'- aGCAUCGGCGGCUggugcagguCCGUGug--GCaGCa -3'
miRNA:   3'- cCGUAGUCGCCGG---------GGUAUuucaCG-CG- -5'
23571 5' -54.3 NC_005261.1 + 57638 0.66 0.936871
Target:  5'- uGGC-UCAGCagccgcccgagcacGCCCCcgAGAcUGCGCg -3'
miRNA:   3'- -CCGuAGUCGc-------------CGGGGuaUUUcACGCG- -5'
23571 5' -54.3 NC_005261.1 + 85583 0.66 0.939317
Target:  5'- cGCGaCcGCGGCCuCCGcGAgcgucacggucacGGUGCGCg -3'
miRNA:   3'- cCGUaGuCGCCGG-GGUaUU-------------UCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 36583 0.66 0.939799
Target:  5'- gGGCccgCcGCGGCCaCCGgggGGGGgcaGCGCu -3'
miRNA:   3'- -CCGua-GuCGCCGG-GGUa--UUUCa--CGCG- -5'
23571 5' -54.3 NC_005261.1 + 121633 0.66 0.94448
Target:  5'- cGC-UCGGCGGCCgCCGcc-GGcgaGCGCg -3'
miRNA:   3'- cCGuAGUCGCCGG-GGUauuUCa--CGCG- -5'
23571 5' -54.3 NC_005261.1 + 68281 0.66 0.938833
Target:  5'- cGCG-CGGCggGGCCCCGgccgcggGCGCg -3'
miRNA:   3'- cCGUaGUCG--CCGGGGUauuuca-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 41161 0.66 0.94448
Target:  5'- aGGCuUCGuccacGCGGCCCgGguccaggccgGgcGUGCGCa -3'
miRNA:   3'- -CCGuAGU-----CGCCGGGgUa---------UuuCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 102288 0.66 0.939799
Target:  5'- cGCGcCAGCGGCCgCGggucguAGccGCGCg -3'
miRNA:   3'- cCGUaGUCGCCGGgGUauu---UCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 68830 0.66 0.936871
Target:  5'- gGGCcgUGGCGGCCCCcccgucc-CGCg -3'
miRNA:   3'- -CCGuaGUCGCCGGGGuauuucacGCG- -5'
23571 5' -54.3 NC_005261.1 + 45630 0.66 0.93487
Target:  5'- cGGCG-CGGCGGgCCCGcgccgGAgcAGUGCccaGCg -3'
miRNA:   3'- -CCGUaGUCGCCgGGGUa----UU--UCACG---CG- -5'
23571 5' -54.3 NC_005261.1 + 30266 0.66 0.94448
Target:  5'- cGGCG-CGGCGGCCC--------GCGCg -3'
miRNA:   3'- -CCGUaGUCGCCGGGguauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 5514 0.66 0.94448
Target:  5'- cGGCAgcggCGGCgaGGCCgCCGgcuucgGCGCg -3'
miRNA:   3'- -CCGUa---GUCG--CCGG-GGUauuucaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.