miRNA display CGI


Results 21 - 40 of 441 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 5' -54.3 NC_005261.1 + 109128 0.76 0.435987
Target:  5'- cGGUGUCGugcGCGGCCCCAggcAG-GCGCc -3'
miRNA:   3'- -CCGUAGU---CGCCGGGGUauuUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 31658 0.76 0.435987
Target:  5'- cGCG-CGGCGGCCCCGgggccgGCGCg -3'
miRNA:   3'- cCGUaGUCGCCGGGGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 76287 0.76 0.445217
Target:  5'- cGCgGUCGGCGcgcGCCCCGUGgcgaAGGUGUGCa -3'
miRNA:   3'- cCG-UAGUCGC---CGGGGUAU----UUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 41625 0.76 0.445217
Target:  5'- cGGCu---GCGGCCCUcggcgaccuUGAGGUGCGCg -3'
miRNA:   3'- -CCGuaguCGCCGGGGu--------AUUUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 14331 0.76 0.445217
Target:  5'- cGCAccccacagCGGCGGCCuuCCGcGAAGUGCGCg -3'
miRNA:   3'- cCGUa-------GUCGCCGG--GGUaUUUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 16957 0.76 0.463998
Target:  5'- cGGCG-CAcCGGCCCCAcAgcGUGCGCc -3'
miRNA:   3'- -CCGUaGUcGCCGGGGUaUuuCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 122366 0.75 0.473543
Target:  5'- cGGC-UCGcGCGGCCCCAccgcggccUGGGG-GCGCu -3'
miRNA:   3'- -CCGuAGU-CGCCGGGGU--------AUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 132646 0.75 0.489015
Target:  5'- gGGCG-CGGCGGCCCUAgcggccgcguguGGGUGCGa -3'
miRNA:   3'- -CCGUaGUCGCCGGGGUau----------UUCACGCg -5'
23571 5' -54.3 NC_005261.1 + 31278 0.75 0.49292
Target:  5'- aGGCGg-AGCGcGCCCgGgccGAGGUGCGCg -3'
miRNA:   3'- -CCGUagUCGC-CGGGgUa--UUUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 73536 0.75 0.501759
Target:  5'- cGCggCGGCGGCCCCGgGAcgcgcccGGUGcCGCa -3'
miRNA:   3'- cCGuaGUCGCCGGGGUaUU-------UCAC-GCG- -5'
23571 5' -54.3 NC_005261.1 + 333 0.75 0.502745
Target:  5'- cGGCGgcugCGGCGGCCCgCAgcccg-GCGCg -3'
miRNA:   3'- -CCGUa---GUCGCCGGG-GUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 104850 0.75 0.502745
Target:  5'- cGGCGgcugCGGCGGCCCgCAgcccg-GCGCg -3'
miRNA:   3'- -CCGUa---GUCGCCGGG-GUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 138004 0.75 0.502745
Target:  5'- cGGCGgcugCGGCGGCCCgCAgcccg-GCGCg -3'
miRNA:   3'- -CCGUa---GUCGCCGGG-GUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 34783 0.75 0.512655
Target:  5'- gGGCG-CGGCGGCCgaCCGcGAGGcGCGCg -3'
miRNA:   3'- -CCGUaGUCGCCGG--GGUaUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 70814 0.75 0.512655
Target:  5'- cGCGcCGGCGGCCCCGg-----GCGCg -3'
miRNA:   3'- cCGUaGUCGCCGGGGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 100749 0.74 0.519639
Target:  5'- cGGCGcgCGGCacgagcuugaaguaGGCCUCGUAGAG-GCGCg -3'
miRNA:   3'- -CCGUa-GUCG--------------CCGGGGUAUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 71468 0.74 0.532706
Target:  5'- aGCAUCAGgaaGGCCUCcc--GGUGCGCg -3'
miRNA:   3'- cCGUAGUCg--CCGGGGuauuUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 84270 0.74 0.539791
Target:  5'- cGGCAUggcgcaggugccgcCGGCGGCCCCGgccccGGcgGCGCc -3'
miRNA:   3'- -CCGUA--------------GUCGCCGGGGUauu--UCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 28400 0.74 0.542838
Target:  5'- cGGCAcgccagauUCGGCGGCCgCCGcggcgGAAGcgGCGCc -3'
miRNA:   3'- -CCGU--------AGUCGCCGG-GGUa----UUUCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 5835 0.74 0.542838
Target:  5'- aGGCGUCggcGGCGGCCUCGggGAAcaGCGCc -3'
miRNA:   3'- -CCGUAG---UCGCCGGGGUa-UUUcaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.