miRNA display CGI


Results 41 - 60 of 441 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 5' -54.3 NC_005261.1 + 124754 0.66 0.93487
Target:  5'- aGCcgCAGCGGCCgCCuccaggcUGAGGaGCGg -3'
miRNA:   3'- cCGuaGUCGCCGG-GGu------AUUUCaCGCg -5'
23571 5' -54.3 NC_005261.1 + 62298 0.66 0.93487
Target:  5'- aGGCcUCGuacacGCGGgCCaCGUAgcGUGUGCa -3'
miRNA:   3'- -CCGuAGU-----CGCCgGG-GUAUuuCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 63725 0.66 0.93487
Target:  5'- uGGCccCGGCGccGCCCCG--AAGaGCGCc -3'
miRNA:   3'- -CCGuaGUCGC--CGGGGUauUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 86743 0.66 0.93487
Target:  5'- aGCAUCAggggcGCGGCgCCgGUGAucaGCGCc -3'
miRNA:   3'- cCGUAGU-----CGCCG-GGgUAUUucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 15269 0.66 0.93487
Target:  5'- cGCccCGGCGGCgCCGccGGG-GCGCg -3'
miRNA:   3'- cCGuaGUCGCCGgGGUauUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 13784 0.66 0.93487
Target:  5'- gGGCAcc--CGGCCCCGgcuGGUGUGg -3'
miRNA:   3'- -CCGUagucGCCGGGGUauuUCACGCg -5'
23571 5' -54.3 NC_005261.1 + 36637 0.66 0.93487
Target:  5'- cGGCAaaGGCGGCgCgCGcGGAGgccacgGCGCg -3'
miRNA:   3'- -CCGUagUCGCCG-GgGUaUUUCa-----CGCG- -5'
23571 5' -54.3 NC_005261.1 + 14343 0.66 0.93487
Target:  5'- cGGCAgcagCAGCGGCagcagCCGcggccGGGgcgGCGCg -3'
miRNA:   3'- -CCGUa---GUCGCCGg----GGUau---UUCa--CGCG- -5'
23571 5' -54.3 NC_005261.1 + 31936 0.66 0.93487
Target:  5'- gGGCucugCcGCGGCgCCAac--GUGCGCu -3'
miRNA:   3'- -CCGua--GuCGCCGgGGUauuuCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 117931 0.66 0.93487
Target:  5'- aGGCcggCuGCGGCCC------GUGCGCg -3'
miRNA:   3'- -CCGua-GuCGCCGGGguauuuCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 108958 0.66 0.93487
Target:  5'- gGGCGUCAGCagcgGGCCCUcc--AGcgGCGg -3'
miRNA:   3'- -CCGUAGUCG----CCGGGGuauuUCa-CGCg -5'
23571 5' -54.3 NC_005261.1 + 85894 0.66 0.93487
Target:  5'- cGGCAgcgCGGCGGgCgCCAaggacggcgaGGAGUGCGa -3'
miRNA:   3'- -CCGUa--GUCGCCgG-GGUa---------UUUCACGCg -5'
23571 5' -54.3 NC_005261.1 + 103301 0.66 0.93487
Target:  5'- cGCGcCGGCcGCCCCccgc-GUGCGCc -3'
miRNA:   3'- cCGUaGUCGcCGGGGuauuuCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 43627 0.66 0.93487
Target:  5'- cGGCGagGGCGcGCgCUCGUGggcgGAGgGCGCg -3'
miRNA:   3'- -CCGUagUCGC-CG-GGGUAU----UUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 28737 0.66 0.93487
Target:  5'- cGGCGggcGCgGGCCCCGgccauuUGCGCu -3'
miRNA:   3'- -CCGUaguCG-CCGGGGUauuuc-ACGCG- -5'
23571 5' -54.3 NC_005261.1 + 109134 0.66 0.93487
Target:  5'- cGGCGUCGGUccccgaguccccGGCCCCcgAGucccuaaauccAGUGUcgGCc -3'
miRNA:   3'- -CCGUAGUCG------------CCGGGGuaUU-----------UCACG--CG- -5'
23571 5' -54.3 NC_005261.1 + 103956 0.66 0.93487
Target:  5'- cGGCGcgaccgCGGCGGCCgCCAcacgGAA--GCGCu -3'
miRNA:   3'- -CCGUa-----GUCGCCGG-GGUa---UUUcaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 87558 0.66 0.93487
Target:  5'- gGGCGUCAGCuuGGCCgUCAgcccc-GCGCc -3'
miRNA:   3'- -CCGUAGUCG--CCGG-GGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 45630 0.66 0.93487
Target:  5'- cGGCG-CGGCGGgCCCGcgccgGAgcAGUGCccaGCg -3'
miRNA:   3'- -CCGUaGUCGCCgGGGUa----UU--UCACG---CG- -5'
23571 5' -54.3 NC_005261.1 + 38759 0.66 0.93487
Target:  5'- uGGCcgCAGCGGCCagcgCCGccgcGGGUcggcccGCGCu -3'
miRNA:   3'- -CCGuaGUCGCCGG----GGUau--UUCA------CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.