Results 101 - 107 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23572 | 3' | -53.9 | NC_005261.1 | + | 136128 | 0.75 | 0.510952 |
Target: 5'- aGGGCGUGCUgcugcucgcGACGCGGGaccUGGCCUuccGCg -3' miRNA: 3'- gCUCGCACGA---------CUGCGUCC---AUUGGA---UG- -5' |
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23572 | 3' | -53.9 | NC_005261.1 | + | 89099 | 0.76 | 0.452704 |
Target: 5'- cCGGGCGcGCUGGCGCGcGcGUGGCaCUGCg -3' miRNA: 3'- -GCUCGCaCGACUGCGU-C-CAUUG-GAUG- -5' |
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23572 | 3' | -53.9 | NC_005261.1 | + | 20571 | 0.79 | 0.310049 |
Target: 5'- gCGcAGCGgcgccgGC-GGCGCGGGUGGCCUACg -3' miRNA: 3'- -GC-UCGCa-----CGaCUGCGUCCAUUGGAUG- -5' |
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23572 | 3' | -53.9 | NC_005261.1 | + | 38583 | 0.79 | 0.331784 |
Target: 5'- -cAGCGUGCUGGCGCgcaugugcaucccGGGcGACCUGCu -3' miRNA: 3'- gcUCGCACGACUGCG-------------UCCaUUGGAUG- -5' |
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23572 | 3' | -53.9 | NC_005261.1 | + | 11778 | 0.79 | 0.302809 |
Target: 5'- gCGAGCGcGCUGGCGCGGcUGGCCUuuGCg -3' miRNA: 3'- -GCUCGCaCGACUGCGUCcAUUGGA--UG- -5' |
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23572 | 3' | -53.9 | NC_005261.1 | + | 76196 | 0.82 | 0.21489 |
Target: 5'- uGGGCGUGCUGAUGCAGcagccgcGCCUGCg -3' miRNA: 3'- gCUCGCACGACUGCGUCcau----UGGAUG- -5' |
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23572 | 3' | -53.9 | NC_005261.1 | + | 117011 | 1.1 | 0.003443 |
Target: 5'- gCGAGCGUGCUGACGCAGGUAACCUACu -3' miRNA: 3'- -GCUCGCACGACUGCGUCCAUUGGAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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