Results 81 - 100 of 107 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23572 | 3' | -53.9 | NC_005261.1 | + | 65521 | 0.66 | 0.939975 |
Target: 5'- gGGGCGgcggGCgcGACGCuGGcgGACCUGg -3' miRNA: 3'- gCUCGCa---CGa-CUGCGuCCa-UUGGAUg -5' |
|||||||
23572 | 3' | -53.9 | NC_005261.1 | + | 133128 | 0.66 | 0.939975 |
Target: 5'- cCGAGCuGgcggaGCUGugGCGcauGGUGGCCg-- -3' miRNA: 3'- -GCUCG-Ca----CGACugCGU---CCAUUGGaug -5' |
|||||||
23572 | 3' | -53.9 | NC_005261.1 | + | 99799 | 0.66 | 0.939975 |
Target: 5'- -aGGCGUGCaggUGACGaAGGgcGCCcGCg -3' miRNA: 3'- gcUCGCACG---ACUGCgUCCauUGGaUG- -5' |
|||||||
23572 | 3' | -53.9 | NC_005261.1 | + | 27667 | 0.66 | 0.939975 |
Target: 5'- uGGGcCGUGgaG-CGCGGGUGugcgGCCUGg -3' miRNA: 3'- gCUC-GCACgaCuGCGUCCAU----UGGAUg -5' |
|||||||
23572 | 3' | -53.9 | NC_005261.1 | + | 118006 | 0.66 | 0.935034 |
Target: 5'- gGAGCG-GCUGGC-CAGGcAGCggGCg -3' miRNA: 3'- gCUCGCaCGACUGcGUCCaUUGgaUG- -5' |
|||||||
23572 | 3' | -53.9 | NC_005261.1 | + | 68104 | 0.66 | 0.935034 |
Target: 5'- uGAGCGUGCUGGCcuuuGCcGGgcACgagGCg -3' miRNA: 3'- gCUCGCACGACUG----CGuCCauUGga-UG- -5' |
|||||||
23572 | 3' | -53.9 | NC_005261.1 | + | 71195 | 0.66 | 0.931948 |
Target: 5'- aCGGGCGgGCUGGucuccggccagguccUGUcaaacaucgAGGUGGCCUGCc -3' miRNA: 3'- -GCUCGCaCGACU---------------GCG---------UCCAUUGGAUG- -5' |
|||||||
23572 | 3' | -53.9 | NC_005261.1 | + | 108995 | 0.66 | 0.944668 |
Target: 5'- uCGcGCG-GCgc-CGCGGcGUAGCCUGCg -3' miRNA: 3'- -GCuCGCaCGacuGCGUC-CAUUGGAUG- -5' |
|||||||
23572 | 3' | -53.9 | NC_005261.1 | + | 14379 | 0.66 | 0.949114 |
Target: 5'- aCGAGCG-GCUGcCGCuAGGcagcgcGACgCUGCa -3' miRNA: 3'- -GCUCGCaCGACuGCG-UCCa-----UUG-GAUG- -5' |
|||||||
23572 | 3' | -53.9 | NC_005261.1 | + | 27200 | 0.66 | 0.949114 |
Target: 5'- uGuAGCGcucGCUG-CgGCAGGUGACCcGCg -3' miRNA: 3'- gC-UCGCa--CGACuG-CGUCCAUUGGaUG- -5' |
|||||||
23572 | 3' | -53.9 | NC_005261.1 | + | 38945 | 0.66 | 0.949545 |
Target: 5'- cCGGGCGggccgcggcgcgcggGCUG-CGCAGcaacaagAGCCUGCa -3' miRNA: 3'- -GCUCGCa--------------CGACuGCGUCca-----UUGGAUG- -5' |
|||||||
23572 | 3' | -53.9 | NC_005261.1 | + | 116483 | 0.66 | 0.953316 |
Target: 5'- gCGGGCGggGCgGGCGCGcGGUAuaaagagcgccGCCgcgGCg -3' miRNA: 3'- -GCUCGCa-CGaCUGCGU-CCAU-----------UGGa--UG- -5' |
|||||||
23572 | 3' | -53.9 | NC_005261.1 | + | 124181 | 0.66 | 0.953316 |
Target: 5'- aGAGCGUcGCgugggggGACGCGuccGGUGGCgugaaCUGCg -3' miRNA: 3'- gCUCGCA-CGa------CUGCGU---CCAUUG-----GAUG- -5' |
|||||||
23572 | 3' | -53.9 | NC_005261.1 | + | 1047 | 0.66 | 0.953316 |
Target: 5'- gCGGGCGgcgGCguuagcGGCGCGGGggGCUgGCc -3' miRNA: 3'- -GCUCGCa--CGa-----CUGCGUCCauUGGaUG- -5' |
|||||||
23572 | 3' | -53.9 | NC_005261.1 | + | 110901 | 0.66 | 0.953316 |
Target: 5'- uGGGCGacUGC-GACGCGacGGUGuuCCUGCc -3' miRNA: 3'- gCUCGC--ACGaCUGCGU--CCAUu-GGAUG- -5' |
|||||||
23572 | 3' | -53.9 | NC_005261.1 | + | 105565 | 0.66 | 0.953316 |
Target: 5'- gCGGGCGgcgGCguuagcGGCGCGGGggGCUgGCc -3' miRNA: 3'- -GCUCGCa--CGa-----CUGCGUCCauUGGaUG- -5' |
|||||||
23572 | 3' | -53.9 | NC_005261.1 | + | 55780 | 0.66 | 0.953316 |
Target: 5'- gGGGCGgcaacgGC-GGCGCGGGgccGGCCggggGCg -3' miRNA: 3'- gCUCGCa-----CGaCUGCGUCCa--UUGGa---UG- -5' |
|||||||
23572 | 3' | -53.9 | NC_005261.1 | + | 30916 | 0.66 | 0.949114 |
Target: 5'- uGGGCGaGCUGcACGC-GGcGGCCUGg -3' miRNA: 3'- gCUCGCaCGAC-UGCGuCCaUUGGAUg -5' |
|||||||
23572 | 3' | -53.9 | NC_005261.1 | + | 2346 | 0.66 | 0.949114 |
Target: 5'- aCGu-CGUGCUGcCGCAGG---CCUGCu -3' miRNA: 3'- -GCucGCACGACuGCGUCCauuGGAUG- -5' |
|||||||
23572 | 3' | -53.9 | NC_005261.1 | + | 80281 | 0.66 | 0.949114 |
Target: 5'- -cGGCGUGCgcacacgGGCGCuGGU-GCCggGCa -3' miRNA: 3'- gcUCGCACGa------CUGCGuCCAuUGGa-UG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home