miRNA display CGI


Results 81 - 100 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23572 3' -53.9 NC_005261.1 + 128104 0.7 0.796065
Target:  5'- gCGAGCG-GCgcGGCGCGGGgucgGGCCgagUGCg -3'
miRNA:   3'- -GCUCGCaCGa-CUGCGUCCa---UUGG---AUG- -5'
23572 3' -53.9 NC_005261.1 + 83986 0.7 0.777266
Target:  5'- aGGGCGcGCUGcacaugagcgcGCGCcGcGUGACCUGCg -3'
miRNA:   3'- gCUCGCaCGAC-----------UGCGuC-CAUUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 46147 0.7 0.777266
Target:  5'- gGGGCGUGCgcGACGCGcGUGugCUGu -3'
miRNA:   3'- gCUCGCACGa-CUGCGUcCAUugGAUg -5'
23572 3' -53.9 NC_005261.1 + 29850 0.7 0.777266
Target:  5'- gGAGCGcgcggGCgcgGACGCGGGcagggaugcGCCUGCg -3'
miRNA:   3'- gCUCGCa----CGa--CUGCGUCCau-------UGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 135780 0.7 0.767657
Target:  5'- aGAGCGcgugccGCUGuCGgAGGUGACCguggGCg -3'
miRNA:   3'- gCUCGCa-----CGACuGCgUCCAUUGGa---UG- -5'
23572 3' -53.9 NC_005261.1 + 97701 0.71 0.748069
Target:  5'- gGGGCGguggGgaGACgGCGGGUGGCCcggGCg -3'
miRNA:   3'- gCUCGCa---CgaCUG-CGUCCAUUGGa--UG- -5'
23572 3' -53.9 NC_005261.1 + 34834 0.71 0.738109
Target:  5'- gGAGC-UGgaGGCGCAGGcGGCCgcgGCg -3'
miRNA:   3'- gCUCGcACgaCUGCGUCCaUUGGa--UG- -5'
23572 3' -53.9 NC_005261.1 + 76105 0.71 0.738109
Target:  5'- -----cUGCUGACGCAGG--GCCUGCa -3'
miRNA:   3'- gcucgcACGACUGCGUCCauUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 79310 0.71 0.732086
Target:  5'- -cGGCGUGCgcgGGCGCGcuGGUGcgcgcgcuggcgcgcGCCUGCg -3'
miRNA:   3'- gcUCGCACGa--CUGCGU--CCAU---------------UGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 35116 0.71 0.717908
Target:  5'- cCGGGCGcGCUGGCGCcgGGGgcGCUgGCc -3'
miRNA:   3'- -GCUCGCaCGACUGCG--UCCauUGGaUG- -5'
23572 3' -53.9 NC_005261.1 + 86932 0.71 0.717908
Target:  5'- -cGGCGUGCgcGAgGUAGGUGGCCgcgGCc -3'
miRNA:   3'- gcUCGCACGa-CUgCGUCCAUUGGa--UG- -5'
23572 3' -53.9 NC_005261.1 + 134565 0.72 0.697399
Target:  5'- uGGGCGgcgccgcgGCUG-CGCAGGgcgGGCCUGg -3'
miRNA:   3'- gCUCGCa-------CGACuGCGUCCa--UUGGAUg -5'
23572 3' -53.9 NC_005261.1 + 16387 0.72 0.687053
Target:  5'- gCGGGC-UGCUGGCGCcGGUGcgccGCCgcgGCg -3'
miRNA:   3'- -GCUCGcACGACUGCGuCCAU----UGGa--UG- -5'
23572 3' -53.9 NC_005261.1 + 96857 0.72 0.687053
Target:  5'- aCGGGgG-GCUcggggGGCGCGGGUAGCgUGCg -3'
miRNA:   3'- -GCUCgCaCGA-----CUGCGUCCAUUGgAUG- -5'
23572 3' -53.9 NC_005261.1 + 87883 0.72 0.670404
Target:  5'- aCGGGCGcggccuaccggcggcUGCUGGUGCAGGUGgaaaGCUUGCa -3'
miRNA:   3'- -GCUCGC---------------ACGACUGCGUCCAU----UGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 43172 0.73 0.6243
Target:  5'- gCGGGCGUGCaUGGCGgAGGgcggUCUGCg -3'
miRNA:   3'- -GCUCGCACG-ACUGCgUCCauu-GGAUG- -5'
23572 3' -53.9 NC_005261.1 + 97634 0.73 0.613812
Target:  5'- gCGGGCGgaGCgGGCGCGGGUGccgcACCUGg -3'
miRNA:   3'- -GCUCGCa-CGaCUGCGUCCAU----UGGAUg -5'
23572 3' -53.9 NC_005261.1 + 45123 0.74 0.586632
Target:  5'- aCGGGCGcgcugaUGCUGACGCucgacggccgcgccgAGGaagUGACCUGCg -3'
miRNA:   3'- -GCUCGC------ACGACUGCG---------------UCC---AUUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 68498 0.74 0.561746
Target:  5'- gGAGUGcuucgcGCUGAUGCAGGcguGCCUGCc -3'
miRNA:   3'- gCUCGCa-----CGACUGCGUCCau-UGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 136128 0.75 0.510952
Target:  5'- aGGGCGUGCUgcugcucgcGACGCGGGaccUGGCCUuccGCg -3'
miRNA:   3'- gCUCGCACGA---------CUGCGUCC---AUUGGA---UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.