miRNA display CGI


Results 61 - 80 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23572 3' -53.9 NC_005261.1 + 76196 0.82 0.21489
Target:  5'- uGGGCGUGCUGAUGCAGcagccgcGCCUGCg -3'
miRNA:   3'- gCUCGCACGACUGCGUCcau----UGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 78926 0.67 0.924398
Target:  5'- cCGAGUG-GuUUGACGCGGGgca-CUGCg -3'
miRNA:   3'- -GCUCGCaC-GACUGCGUCCauugGAUG- -5'
23572 3' -53.9 NC_005261.1 + 79310 0.71 0.732086
Target:  5'- -cGGCGUGCgcgGGCGCGcuGGUGcgcgcgcuggcgcgcGCCUGCg -3'
miRNA:   3'- gcUCGCACGa--CUGCGU--CCAU---------------UGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 80018 0.68 0.871953
Target:  5'- gCGGGCGcgcUGCUGGCGCgcgcgcugacggAGGagcugggcuGCCUGCa -3'
miRNA:   3'- -GCUCGC---ACGACUGCG------------UCCau-------UGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 80183 0.67 0.918703
Target:  5'- uCGAGCGUGCcagcuccUGCAGGUAcaGCUUGg -3'
miRNA:   3'- -GCUCGCACGacu----GCGUCCAU--UGGAUg -5'
23572 3' -53.9 NC_005261.1 + 80281 0.66 0.949114
Target:  5'- -cGGCGUGCgcacacgGGCGCuGGU-GCCggGCa -3'
miRNA:   3'- gcUCGCACGa------CUGCGuCCAuUGGa-UG- -5'
23572 3' -53.9 NC_005261.1 + 83415 0.67 0.912758
Target:  5'- --cGCGUa-UGACGCGgaccuGGUGGCCUACg -3'
miRNA:   3'- gcuCGCAcgACUGCGU-----CCAUUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 83712 0.69 0.856493
Target:  5'- uGGcGCGU-CUGACGCcgucgccggAGGgcGCCUGCg -3'
miRNA:   3'- gCU-CGCAcGACUGCG---------UCCauUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 83986 0.7 0.777266
Target:  5'- aGGGCGcGCUGcacaugagcgcGCGCcGcGUGACCUGCg -3'
miRNA:   3'- gCUCGCaCGAC-----------UGCGuC-CAUUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 84255 0.68 0.879347
Target:  5'- gGGGCGcuugGCccccggcaUGGCGCAGGUGccGCCgGCg -3'
miRNA:   3'- gCUCGCa---CG--------ACUGCGUCCAU--UGGaUG- -5'
23572 3' -53.9 NC_005261.1 + 86932 0.71 0.717908
Target:  5'- -cGGCGUGCgcGAgGUAGGUGGCCgcgGCc -3'
miRNA:   3'- gcUCGCACGa-CUgCGUCCAUUGGa--UG- -5'
23572 3' -53.9 NC_005261.1 + 87816 0.7 0.805235
Target:  5'- aCGAGCGgcccGC-GACGCGGGgcuGCCgGCc -3'
miRNA:   3'- -GCUCGCa---CGaCUGCGUCCau-UGGaUG- -5'
23572 3' -53.9 NC_005261.1 + 87883 0.72 0.670404
Target:  5'- aCGGGCGcggccuaccggcggcUGCUGGUGCAGGUGgaaaGCUUGCa -3'
miRNA:   3'- -GCUCGC---------------ACGACUGCGUCCAU----UGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 89099 0.76 0.452704
Target:  5'- cCGGGCGcGCUGGCGCGcGcGUGGCaCUGCg -3'
miRNA:   3'- -GCUCGCaCGACUGCGU-C-CAUUG-GAUG- -5'
23572 3' -53.9 NC_005261.1 + 89590 0.68 0.893436
Target:  5'- cCGGGCGgggGCcGGCGCAGGggcggGGCgUGg -3'
miRNA:   3'- -GCUCGCa--CGaCUGCGUCCa----UUGgAUg -5'
23572 3' -53.9 NC_005261.1 + 94517 0.66 0.939975
Target:  5'- cCGcGCGUGCUcgcgcagcgcGugGCAGGccagGACCUcGCc -3'
miRNA:   3'- -GCuCGCACGA----------CugCGUCCa---UUGGA-UG- -5'
23572 3' -53.9 NC_005261.1 + 96113 0.68 0.879347
Target:  5'- uCGGGaCGUcGCUGGC-CAuGGUcGACCUGCg -3'
miRNA:   3'- -GCUC-GCA-CGACUGcGU-CCA-UUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 96857 0.72 0.687053
Target:  5'- aCGGGgG-GCUcggggGGCGCGGGUAGCgUGCg -3'
miRNA:   3'- -GCUCgCaCGA-----CUGCGUCCAUUGgAUG- -5'
23572 3' -53.9 NC_005261.1 + 97634 0.73 0.613812
Target:  5'- gCGGGCGgaGCgGGCGCGGGUGccgcACCUGg -3'
miRNA:   3'- -GCUCGCa-CGaCUGCGUCCAU----UGGAUg -5'
23572 3' -53.9 NC_005261.1 + 97701 0.71 0.748069
Target:  5'- gGGGCGguggGgaGACgGCGGGUGGCCcggGCg -3'
miRNA:   3'- gCUCGCa---CgaCUG-CGUCCAUUGGa--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.