Results 101 - 107 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23572 | 3' | -53.9 | NC_005261.1 | + | 128104 | 0.7 | 0.796065 |
Target: 5'- gCGAGCG-GCgcGGCGCGGGgucgGGCCgagUGCg -3' miRNA: 3'- -GCUCGCaCGa-CUGCGUCCa---UUGG---AUG- -5' |
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23572 | 3' | -53.9 | NC_005261.1 | + | 133128 | 0.66 | 0.939975 |
Target: 5'- cCGAGCuGgcggaGCUGugGCGcauGGUGGCCg-- -3' miRNA: 3'- -GCUCG-Ca----CGACugCGU---CCAUUGGaug -5' |
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23572 | 3' | -53.9 | NC_005261.1 | + | 133348 | 0.67 | 0.906563 |
Target: 5'- gCGcGCGgcGCUGccGCGCAGGgcuucggcuGCCUGCg -3' miRNA: 3'- -GCuCGCa-CGAC--UGCGUCCau-------UGGAUG- -5' |
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23572 | 3' | -53.9 | NC_005261.1 | + | 134051 | 0.67 | 0.900122 |
Target: 5'- aGAGCGcgaaGCU--CGCGGGcccgGACCUGCa -3' miRNA: 3'- gCUCGCa---CGAcuGCGUCCa---UUGGAUG- -5' |
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23572 | 3' | -53.9 | NC_005261.1 | + | 134565 | 0.72 | 0.697399 |
Target: 5'- uGGGCGgcgccgcgGCUG-CGCAGGgcgGGCCUGg -3' miRNA: 3'- gCUCGCa-------CGACuGCGUCCa--UUGGAUg -5' |
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23572 | 3' | -53.9 | NC_005261.1 | + | 135780 | 0.7 | 0.767657 |
Target: 5'- aGAGCGcgugccGCUGuCGgAGGUGACCguggGCg -3' miRNA: 3'- gCUCGCa-----CGACuGCgUCCAUUGGa---UG- -5' |
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23572 | 3' | -53.9 | NC_005261.1 | + | 136128 | 0.75 | 0.510952 |
Target: 5'- aGGGCGUGCUgcugcucgcGACGCGGGaccUGGCCUuccGCg -3' miRNA: 3'- gCUCGCACGA---------CUGCGUCC---AUUGGA---UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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