miRNA display CGI


Results 81 - 100 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23572 3' -53.9 NC_005261.1 + 31611 0.75 0.510952
Target:  5'- aGGGCGUGCUgcugcucgcGACGCGGGaccUGGCCUuccGCg -3'
miRNA:   3'- gCUCGCACGA---------CUGCGUCC---AUUGGA---UG- -5'
23572 3' -53.9 NC_005261.1 + 31447 0.66 0.953316
Target:  5'- gCGGGCGcagacggcGCUGGCGCuGGccGCCgGCa -3'
miRNA:   3'- -GCUCGCa-------CGACUGCGuCCauUGGaUG- -5'
23572 3' -53.9 NC_005261.1 + 30916 0.66 0.949114
Target:  5'- uGGGCGaGCUGcACGC-GGcGGCCUGg -3'
miRNA:   3'- gCUCGCaCGAC-UGCGuCCaUUGGAUg -5'
23572 3' -53.9 NC_005261.1 + 29850 0.7 0.777266
Target:  5'- gGAGCGcgcggGCgcgGACGCGGGcagggaugcGCCUGCg -3'
miRNA:   3'- gCUCGCa----CGa--CUGCGUCCau-------UGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 29534 0.67 0.900122
Target:  5'- aGAGCGcgaaGCU--CGCGGGcccgGACCUGCa -3'
miRNA:   3'- gCUCGCa---CGAcuGCGUCCa---UUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 28611 0.66 0.939975
Target:  5'- cCGAGCuGgcggaGCUGugGCGcauGGUGGCCg-- -3'
miRNA:   3'- -GCUCG-Ca----CGACugCGU---CCAUUGGaug -5'
23572 3' -53.9 NC_005261.1 + 27667 0.66 0.939975
Target:  5'- uGGGcCGUGgaG-CGCGGGUGugcgGCCUGg -3'
miRNA:   3'- gCUC-GCACgaCuGCGUCCAU----UGGAUg -5'
23572 3' -53.9 NC_005261.1 + 27200 0.66 0.949114
Target:  5'- uGuAGCGcucGCUG-CgGCAGGUGACCcGCg -3'
miRNA:   3'- gC-UCGCa--CGACuG-CGUCCAUUGGaUG- -5'
23572 3' -53.9 NC_005261.1 + 26959 0.68 0.88651
Target:  5'- gCGGGCcggGUGCUcGCucucagcgGCAGGUGGCCUGg -3'
miRNA:   3'- -GCUCG---CACGAcUG--------CGUCCAUUGGAUg -5'
23572 3' -53.9 NC_005261.1 + 26466 0.66 0.929842
Target:  5'- cCGGGCGcGCacGCGCAGGUGcacgagcuGCCcGCa -3'
miRNA:   3'- -GCUCGCaCGacUGCGUCCAU--------UGGaUG- -5'
23572 3' -53.9 NC_005261.1 + 21163 0.66 0.929842
Target:  5'- cCGAGCucGUGCUuaAC-CAGGcUGGCCUGCg -3'
miRNA:   3'- -GCUCG--CACGAc-UGcGUCC-AUUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 20571 0.79 0.310049
Target:  5'- gCGcAGCGgcgccgGC-GGCGCGGGUGGCCUACg -3'
miRNA:   3'- -GC-UCGCa-----CGaCUGCGUCCAUUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 18859 0.69 0.856493
Target:  5'- gGAGCGUG--GAUGCAGG--GCUUGCa -3'
miRNA:   3'- gCUCGCACgaCUGCGUCCauUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 16850 0.67 0.924398
Target:  5'- -aGGCGccGCcGcCGCGGGgcGCCUGCa -3'
miRNA:   3'- gcUCGCa-CGaCuGCGUCCauUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 16387 0.72 0.687053
Target:  5'- gCGGGC-UGCUGGCGCcGGUGcgccGCCgcgGCg -3'
miRNA:   3'- -GCUCGcACGACUGCGuCCAU----UGGa--UG- -5'
23572 3' -53.9 NC_005261.1 + 14609 0.66 0.944668
Target:  5'- gCGcAGCG-GCUGAUggGCAGccugAACCUGCu -3'
miRNA:   3'- -GC-UCGCaCGACUG--CGUCca--UUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 14379 0.66 0.949114
Target:  5'- aCGAGCG-GCUGcCGCuAGGcagcgcGACgCUGCa -3'
miRNA:   3'- -GCUCGCaCGACuGCG-UCCa-----UUG-GAUG- -5'
23572 3' -53.9 NC_005261.1 + 11778 0.79 0.302809
Target:  5'- gCGAGCGcGCUGGCGCGGcUGGCCUuuGCg -3'
miRNA:   3'- -GCUCGCaCGACUGCGUCcAUUGGA--UG- -5'
23572 3' -53.9 NC_005261.1 + 11705 0.66 0.953316
Target:  5'- cCGAgGCGcgGCgGGCGCGGGcGcccaggcagaccGCCUGCg -3'
miRNA:   3'- -GCU-CGCa-CGaCUGCGUCCaU------------UGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 8401 0.66 0.939007
Target:  5'- gGAGCGcGCgcugggcauccgGGCGCAGGgcGCggGCg -3'
miRNA:   3'- gCUCGCaCGa-----------CUGCGUCCauUGgaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.