Results 101 - 107 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23572 | 3' | -53.9 | NC_005261.1 | + | 7989 | 0.67 | 0.912758 |
Target: 5'- aCGAGCc-GCUGGCGCGGc--GCCUGa -3' miRNA: 3'- -GCUCGcaCGACUGCGUCcauUGGAUg -5' |
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23572 | 3' | -53.9 | NC_005261.1 | + | 7387 | 0.68 | 0.871953 |
Target: 5'- cCGGGCGcgcgcgcaagGUUGAgCGCAcGGUGGCCUGg -3' miRNA: 3'- -GCUCGCa---------CGACU-GCGU-CCAUUGGAUg -5' |
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23572 | 3' | -53.9 | NC_005261.1 | + | 7062 | 0.68 | 0.871953 |
Target: 5'- cCGGGCGUG-UGGCcCAGGggcagGACCUGu -3' miRNA: 3'- -GCUCGCACgACUGcGUCCa----UUGGAUg -5' |
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23572 | 3' | -53.9 | NC_005261.1 | + | 4478 | 0.66 | 0.944668 |
Target: 5'- uCGcGCG-GCgc-CGCGGcGUAGCCUGCg -3' miRNA: 3'- -GCuCGCaCGacuGCGUC-CAUUGGAUG- -5' |
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23572 | 3' | -53.9 | NC_005261.1 | + | 2346 | 0.66 | 0.949114 |
Target: 5'- aCGu-CGUGCUGcCGCAGG---CCUGCu -3' miRNA: 3'- -GCucGCACGACuGCGUCCauuGGAUG- -5' |
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23572 | 3' | -53.9 | NC_005261.1 | + | 1789 | 0.67 | 0.918703 |
Target: 5'- --cGCGUGCcccugcGACGCccgcgAGGggGCCUGCg -3' miRNA: 3'- gcuCGCACGa-----CUGCG-----UCCauUGGAUG- -5' |
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23572 | 3' | -53.9 | NC_005261.1 | + | 1047 | 0.66 | 0.953316 |
Target: 5'- gCGGGCGgcgGCguuagcGGCGCGGGggGCUgGCc -3' miRNA: 3'- -GCUCGCa--CGa-----CUGCGUCCauUGGaUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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