miRNA display CGI


Results 61 - 80 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23572 3' -53.9 NC_005261.1 + 111580 0.68 0.871953
Target:  5'- cCGGGCGUG-UGGCcCAGGggcagGACCUGu -3'
miRNA:   3'- -GCUCGCACgACUGcGUCCa----UUGGAUg -5'
23572 3' -53.9 NC_005261.1 + 7387 0.68 0.871953
Target:  5'- cCGGGCGcgcgcgcaagGUUGAgCGCAcGGUGGCCUGg -3'
miRNA:   3'- -GCUCGCa---------CGACU-GCGU-CCAUUGGAUg -5'
23572 3' -53.9 NC_005261.1 + 66970 0.69 0.831722
Target:  5'- gCGcGCGUGCUGcucgGCGCGGGgcucGgCUGCg -3'
miRNA:   3'- -GCuCGCACGAC----UGCGUCCau--UgGAUG- -5'
23572 3' -53.9 NC_005261.1 + 83712 0.69 0.856493
Target:  5'- uGGcGCGU-CUGACGCcgucgccggAGGgcGCCUGCg -3'
miRNA:   3'- gCU-CGCAcGACUGCG---------UCCauUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 51865 0.69 0.856493
Target:  5'- gGAGCGcUGC-GACGCGGGc-GCCUuCg -3'
miRNA:   3'- gCUCGC-ACGaCUGCGUCCauUGGAuG- -5'
23572 3' -53.9 NC_005261.1 + 44439 0.68 0.864333
Target:  5'- gCGGGCG-GCgcGGCGUcccgGGGgcACCUGCu -3'
miRNA:   3'- -GCUCGCaCGa-CUGCG----UCCauUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 99515 0.68 0.864333
Target:  5'- gCGGGCGcUGggGGCGCGGGccUGGCCgGCu -3'
miRNA:   3'- -GCUCGC-ACgaCUGCGUCC--AUUGGaUG- -5'
23572 3' -53.9 NC_005261.1 + 32531 0.68 0.871953
Target:  5'- aGA-CGUcGCUGGCGCuGGUGAUCguggGCg -3'
miRNA:   3'- gCUcGCA-CGACUGCGuCCAUUGGa---UG- -5'
23572 3' -53.9 NC_005261.1 + 80018 0.68 0.871953
Target:  5'- gCGGGCGcgcUGCUGGCGCgcgcgcugacggAGGagcugggcuGCCUGCa -3'
miRNA:   3'- -GCUCGC---ACGACUGCG------------UCCau-------UGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 118891 0.67 0.924398
Target:  5'- --cGCGgGC--GCGCuGGUGGCCUGCg -3'
miRNA:   3'- gcuCGCaCGacUGCGuCCAUUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 118678 0.66 0.929842
Target:  5'- aGGGCGgcgggcGCUGGCGCAcgcgcggcguGGU--CCUGCu -3'
miRNA:   3'- gCUCGCa-----CGACUGCGU----------CCAuuGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 42801 0.66 0.935034
Target:  5'- cCGAGCGUGCaGACGUccGcGGCCg-- -3'
miRNA:   3'- -GCUCGCACGaCUGCGucCaUUGGaug -5'
23572 3' -53.9 NC_005261.1 + 28611 0.66 0.939975
Target:  5'- cCGAGCuGgcggaGCUGugGCGcauGGUGGCCg-- -3'
miRNA:   3'- -GCUCG-Ca----CGACugCGU---CCAUUGGaug -5'
23572 3' -53.9 NC_005261.1 + 117910 0.66 0.944668
Target:  5'- uGAGCG-GCUG-CGCGGGaacgaaGGCCgGCu -3'
miRNA:   3'- gCUCGCaCGACuGCGUCCa-----UUGGaUG- -5'
23572 3' -53.9 NC_005261.1 + 4478 0.66 0.944668
Target:  5'- uCGcGCG-GCgc-CGCGGcGUAGCCUGCg -3'
miRNA:   3'- -GCuCGCaCGacuGCGUC-CAUUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 38945 0.66 0.949545
Target:  5'- cCGGGCGggccgcggcgcgcggGCUG-CGCAGcaacaagAGCCUGCa -3'
miRNA:   3'- -GCUCGCa--------------CGACuGCGUCca-----UUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 116483 0.66 0.953316
Target:  5'- gCGGGCGggGCgGGCGCGcGGUAuaaagagcgccGCCgcgGCg -3'
miRNA:   3'- -GCUCGCa-CGaCUGCGU-CCAU-----------UGGa--UG- -5'
23572 3' -53.9 NC_005261.1 + 124181 0.66 0.953316
Target:  5'- aGAGCGUcGCgugggggGACGCGuccGGUGGCgugaaCUGCg -3'
miRNA:   3'- gCUCGCA-CGa------CUGCGU---CCAUUG-----GAUG- -5'
23572 3' -53.9 NC_005261.1 + 1047 0.66 0.953316
Target:  5'- gCGGGCGgcgGCguuagcGGCGCGGGggGCUgGCc -3'
miRNA:   3'- -GCUCGCa--CGa-----CUGCGUCCauUGGaUG- -5'
23572 3' -53.9 NC_005261.1 + 117011 1.1 0.003443
Target:  5'- gCGAGCGUGCUGACGCAGGUAACCUACu -3'
miRNA:   3'- -GCUCGCACGACUGCGUCCAUUGGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.