miRNA display CGI

Results 101 - 107 of 107 are showing below:
Show page: 1 2 3 4 5 6

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
23572	3'	-53.9	NC_005261.1	+	80183	0.67	0.918703
	Target:  5'- uCGAGCGUGCcagcuccUGCAGGUAcaGCUUGg -3' miRNA:   3'- -GCUCGCACGacu----GCGUCCAU--UGGAUg -5'
23572	3'	-53.9	NC_005261.1	+	133348	0.67	0.906563
	Target:  5'- gCGcGCGgcGCUGccGCGCAGGgcuucggcuGCCUGCg -3' miRNA:   3'- -GCuCGCa-CGAC--UGCGUCCau-------UGGAUG- -5'
23572	3'	-53.9	NC_005261.1	+	109199	0.67	0.906563
	Target:  5'- uCGGGCGUGCgcaGGCGCucGUAGgCgcgGCa -3' miRNA:   3'- -GCUCGCACGa--CUGCGucCAUUgGa--UG- -5'
23572	3'	-53.9	NC_005261.1	+	72615	0.67	0.900122
	Target:  5'- cCGGGCGgGCgGGCGCAGGggcGGCUUu- -3' miRNA:   3'- -GCUCGCaCGaCUGCGUCCa--UUGGAug -5'
23572	3'	-53.9	NC_005261.1	+	35793	0.67	0.900122
	Target:  5'- gCGGGCGccaUGGCGCGGGacGGCCUGg -3' miRNA:   3'- -GCUCGCacgACUGCGUCCa-UUGGAUg -5'
23572	3'	-53.9	NC_005261.1	+	29534	0.67	0.900122
	Target:  5'- aGAGCGcgaaGCU--CGCGGGcccgGACCUGCa -3' miRNA:   3'- gCUCGCa---CGAcuGCGUCCa---UUGGAUG- -5'
23572	3'	-53.9	NC_005261.1	+	110901	0.66	0.953316
	Target:  5'- uGGGCGacUGC-GACGCGacGGUGuuCCUGCc -3' miRNA:   3'- gCUCGC--ACGaCUGCGU--CCAUu-GGAUG- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home