Results 81 - 100 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23572 | 3' | -53.9 | NC_005261.1 | + | 71195 | 0.66 | 0.931948 |
Target: 5'- aCGGGCGgGCUGGucuccggccagguccUGUcaaacaucgAGGUGGCCUGCc -3' miRNA: 3'- -GCUCGCaCGACU---------------GCG---------UCCAUUGGAUG- -5' |
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23572 | 3' | -53.9 | NC_005261.1 | + | 68104 | 0.66 | 0.935034 |
Target: 5'- uGAGCGUGCUGGCcuuuGCcGGgcACgagGCg -3' miRNA: 3'- gCUCGCACGACUG----CGuCCauUGga-UG- -5' |
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23572 | 3' | -53.9 | NC_005261.1 | + | 118006 | 0.66 | 0.935034 |
Target: 5'- gGAGCG-GCUGGC-CAGGcAGCggGCg -3' miRNA: 3'- gCUCGCaCGACUGcGUCCaUUGgaUG- -5' |
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23572 | 3' | -53.9 | NC_005261.1 | + | 8401 | 0.66 | 0.939007 |
Target: 5'- gGAGCGcGCgcugggcauccgGGCGCAGGgcGCggGCg -3' miRNA: 3'- gCUCGCaCGa-----------CUGCGUCCauUGgaUG- -5' |
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23572 | 3' | -53.9 | NC_005261.1 | + | 27667 | 0.66 | 0.939975 |
Target: 5'- uGGGcCGUGgaG-CGCGGGUGugcgGCCUGg -3' miRNA: 3'- gCUC-GCACgaCuGCGUCCAU----UGGAUg -5' |
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23572 | 3' | -53.9 | NC_005261.1 | + | 94517 | 0.66 | 0.939975 |
Target: 5'- cCGcGCGUGCUcgcgcagcgcGugGCAGGccagGACCUcGCc -3' miRNA: 3'- -GCuCGCACGA----------CugCGUCCa---UUGGA-UG- -5' |
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23572 | 3' | -53.9 | NC_005261.1 | + | 99799 | 0.66 | 0.939975 |
Target: 5'- -aGGCGUGCaggUGACGaAGGgcGCCcGCg -3' miRNA: 3'- gcUCGCACG---ACUGCgUCCauUGGaUG- -5' |
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23572 | 3' | -53.9 | NC_005261.1 | + | 133128 | 0.66 | 0.939975 |
Target: 5'- cCGAGCuGgcggaGCUGugGCGcauGGUGGCCg-- -3' miRNA: 3'- -GCUCG-Ca----CGACugCGU---CCAUUGGaug -5' |
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23572 | 3' | -53.9 | NC_005261.1 | + | 43909 | 0.66 | 0.929842 |
Target: 5'- cCGGGCGaguucggGCUGGCGCcccccuGGGUcGCCgACu -3' miRNA: 3'- -GCUCGCa------CGACUGCG------UCCAuUGGaUG- -5' |
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23572 | 3' | -53.9 | NC_005261.1 | + | 21163 | 0.66 | 0.929842 |
Target: 5'- cCGAGCucGUGCUuaAC-CAGGcUGGCCUGCg -3' miRNA: 3'- -GCUCG--CACGAc-UGcGUCC-AUUGGAUG- -5' |
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23572 | 3' | -53.9 | NC_005261.1 | + | 78926 | 0.67 | 0.924398 |
Target: 5'- cCGAGUG-GuUUGACGCGGGgca-CUGCg -3' miRNA: 3'- -GCUCGCaC-GACUGCGUCCauugGAUG- -5' |
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23572 | 3' | -53.9 | NC_005261.1 | + | 41574 | 0.67 | 0.906563 |
Target: 5'- -cAGCGUuCUGGCGCugcugcuGGaGGCCUGCg -3' miRNA: 3'- gcUCGCAcGACUGCGu------CCaUUGGAUG- -5' |
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23572 | 3' | -53.9 | NC_005261.1 | + | 7989 | 0.67 | 0.912758 |
Target: 5'- aCGAGCc-GCUGGCGCGGc--GCCUGa -3' miRNA: 3'- -GCUCGcaCGACUGCGUCcauUGGAUg -5' |
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23572 | 3' | -53.9 | NC_005261.1 | + | 83415 | 0.67 | 0.912758 |
Target: 5'- --cGCGUa-UGACGCGgaccuGGUGGCCUACg -3' miRNA: 3'- gcuCGCAcgACUGCGU-----CCAUUGGAUG- -5' |
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23572 | 3' | -53.9 | NC_005261.1 | + | 36516 | 0.67 | 0.918703 |
Target: 5'- gCGGGCGcGCUGGCGCAGcuggAGCgCUuCg -3' miRNA: 3'- -GCUCGCaCGACUGCGUCca--UUG-GAuG- -5' |
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23572 | 3' | -53.9 | NC_005261.1 | + | 1789 | 0.67 | 0.918703 |
Target: 5'- --cGCGUGCcccugcGACGCccgcgAGGggGCCUGCg -3' miRNA: 3'- gcuCGCACGa-----CUGCG-----UCCauUGGAUG- -5' |
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23572 | 3' | -53.9 | NC_005261.1 | + | 126062 | 0.67 | 0.918703 |
Target: 5'- -cGGCGgcGCUGGCcuguGCGGGgcuuggGGCCUGCg -3' miRNA: 3'- gcUCGCa-CGACUG----CGUCCa-----UUGGAUG- -5' |
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23572 | 3' | -53.9 | NC_005261.1 | + | 52825 | 0.67 | 0.924398 |
Target: 5'- gCGcGCGUGCUcGGgcuCGCGGGc-GCCUACc -3' miRNA: 3'- -GCuCGCACGA-CU---GCGUCCauUGGAUG- -5' |
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23572 | 3' | -53.9 | NC_005261.1 | + | 16850 | 0.67 | 0.924398 |
Target: 5'- -aGGCGccGCcGcCGCGGGgcGCCUGCa -3' miRNA: 3'- gcUCGCa-CGaCuGCGUCCauUGGAUG- -5' |
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23572 | 3' | -53.9 | NC_005261.1 | + | 43032 | 0.67 | 0.924398 |
Target: 5'- gCGGGCGgGC-GGCGCGGGUcccagGGCUgggGCa -3' miRNA: 3'- -GCUCGCaCGaCUGCGUCCA-----UUGGa--UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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