miRNA display CGI

Results 101 - 107 of 107 are showing below:
Show page: 1 2 3 4 5 6

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
23572	3'	-53.9	NC_005261.1	+	83415	0.67	0.912758
	Target:  5'- --cGCGUa-UGACGCGgaccuGGUGGCCUACg -3' miRNA:   3'- gcuCGCAcgACUGCGU-----CCAUUGGAUG- -5'
23572	3'	-53.9	NC_005261.1	+	36516	0.67	0.918703
	Target:  5'- gCGGGCGcGCUGGCGCAGcuggAGCgCUuCg -3' miRNA:   3'- -GCUCGCaCGACUGCGUCca--UUG-GAuG- -5'
23572	3'	-53.9	NC_005261.1	+	1789	0.67	0.918703
	Target:  5'- --cGCGUGCcccugcGACGCccgcgAGGggGCCUGCg -3' miRNA:   3'- gcuCGCACGa-----CUGCG-----UCCauUGGAUG- -5'
23572	3'	-53.9	NC_005261.1	+	126062	0.67	0.918703
	Target:  5'- -cGGCGgcGCUGGCcuguGCGGGgcuuggGGCCUGCg -3' miRNA:   3'- gcUCGCa-CGACUG----CGUCCa-----UUGGAUG- -5'
23572	3'	-53.9	NC_005261.1	+	52825	0.67	0.924398
	Target:  5'- gCGcGCGUGCUcGGgcuCGCGGGc-GCCUACc -3' miRNA:   3'- -GCuCGCACGA-CU---GCGUCCauUGGAUG- -5'
23572	3'	-53.9	NC_005261.1	+	16850	0.67	0.924398
	Target:  5'- -aGGCGccGCcGcCGCGGGgcGCCUGCa -3' miRNA:   3'- gcUCGCa-CGaCuGCGUCCauUGGAUG- -5'
23572	3'	-53.9	NC_005261.1	+	65521	0.66	0.939975
	Target:  5'- gGGGCGgcggGCgcGACGCuGGcgGACCUGg -3' miRNA:   3'- gCUCGCa---CGa-CUGCGuCCa-UUGGAUg -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home