miRNA display CGI


Results 1 - 20 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23572 5' -56.1 NC_005261.1 + 138126 0.66 0.873364
Target:  5'- aCGgGGGCCgcgacGGCCggcGGgauGGCGCGGg -3'
miRNA:   3'- aGCgUCCGG-----UCGGa--CCaauUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 136865 0.66 0.8502
Target:  5'- -gGCAGGgCAGgaUGGcgUAGGCGCGGc -3'
miRNA:   3'- agCGUCCgGUCggACCa-AUUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 136637 0.68 0.780035
Target:  5'- -gGCGGGaaGGCCUGGUccgccugGAGCuCGAu -3'
miRNA:   3'- agCGUCCggUCGGACCAa------UUCGuGCU- -5'
23572 5' -56.1 NC_005261.1 + 136484 0.7 0.680654
Target:  5'- aCGguGGCCAcgcGCCUGGgcccGCGCa- -3'
miRNA:   3'- aGCguCCGGU---CGGACCaauuCGUGcu -5'
23572 5' -56.1 NC_005261.1 + 136074 0.69 0.711333
Target:  5'- aCGCcuGGGCCGGguCCUGGacGGGCGCGc -3'
miRNA:   3'- aGCG--UCCGGUC--GGACCaaUUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 135084 0.7 0.649603
Target:  5'- -gGCGGGCUcgcGGCCcGGcggcgGAGCGCGAg -3'
miRNA:   3'- agCGUCCGG---UCGGaCCaa---UUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 134928 0.69 0.735439
Target:  5'- aUGCGGGCCGGggcaccgcgggcggaCCUGGagGAGgACGGg -3'
miRNA:   3'- aGCGUCCGGUC---------------GGACCaaUUCgUGCU- -5'
23572 5' -56.1 NC_005261.1 + 134582 0.7 0.639212
Target:  5'- gCGCAGGgCgGGCCUGGc-GAGCAUa- -3'
miRNA:   3'- aGCGUCC-GgUCGGACCaaUUCGUGcu -5'
23572 5' -56.1 NC_005261.1 + 134314 0.66 0.858134
Target:  5'- cCGgAGGCCGGCgCcGGc--GGCGCGGg -3'
miRNA:   3'- aGCgUCCGGUCG-GaCCaauUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 134062 0.68 0.789379
Target:  5'- cUCGCGGGcCCGGaCCUGcagcuGGCGCGc -3'
miRNA:   3'- -AGCGUCC-GGUC-GGACcaau-UCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 134021 0.68 0.780035
Target:  5'- aCGCGcGCCgcgacgccauGGCCUGGcugcaGAGCGCGAa -3'
miRNA:   3'- aGCGUcCGG----------UCGGACCaa---UUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 133748 0.67 0.798576
Target:  5'- gCGCAGGCUAcGCCgcGGcgccGCGCGAc -3'
miRNA:   3'- aGCGUCCGGU-CGGa-CCaauuCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 133278 0.69 0.711333
Target:  5'- cCGC-GGCCGggggcGCCUGGgccgcGGCGCGGg -3'
miRNA:   3'- aGCGuCCGGU-----CGGACCaau--UCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 132959 0.7 0.659979
Target:  5'- cCGC-GGCCGGCCaUGGcgUcucccggcGGGCACGAg -3'
miRNA:   3'- aGCGuCCGGUCGG-ACCa-A--------UUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 129189 0.67 0.833727
Target:  5'- cCGCAGGCCAGCgc-GU--GGCGCa- -3'
miRNA:   3'- aGCGUCCGGUCGgacCAauUCGUGcu -5'
23572 5' -56.1 NC_005261.1 + 128504 0.67 0.825202
Target:  5'- -gGCGGGCUAGUCgcGGcgGAGCGCu- -3'
miRNA:   3'- agCGUCCGGUCGGa-CCaaUUCGUGcu -5'
23572 5' -56.1 NC_005261.1 + 128405 0.71 0.608039
Target:  5'- -gGCGGGCCGGCUagGGUgggcucgcUGGGCugGGc -3'
miRNA:   3'- agCGUCCGGUCGGa-CCA--------AUUCGugCU- -5'
23572 5' -56.1 NC_005261.1 + 128376 0.67 0.807619
Target:  5'- -gGCAGGCCGGCUgGGgcGGGCuuGc -3'
miRNA:   3'- agCGUCCGGUCGGaCCaaUUCGugCu -5'
23572 5' -56.1 NC_005261.1 + 128319 0.69 0.721433
Target:  5'- -gGCAGGCCGGCUgGGgcGGGCuugccccggGCGGg -3'
miRNA:   3'- agCGUCCGGUCGGaCCaaUUCG---------UGCU- -5'
23572 5' -56.1 NC_005261.1 + 128291 0.68 0.789379
Target:  5'- -gGCGGGCCGGCUaGGgUGGGCuCGc -3'
miRNA:   3'- agCGUCCGGUCGGaCCaAUUCGuGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.