miRNA display CGI


Results 1 - 20 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23572 5' -56.1 NC_005261.1 + 115413 0.66 0.880647
Target:  5'- cCGCGGGCggCAGCCgGGgccgcGGCcCGAg -3'
miRNA:   3'- aGCGUCCG--GUCGGaCCaau--UCGuGCU- -5'
23572 5' -56.1 NC_005261.1 + 68514 0.66 0.865857
Target:  5'- aUGCAGGCguGCCUGcc--GGCGCc- -3'
miRNA:   3'- aGCGUCCGguCGGACcaauUCGUGcu -5'
23572 5' -56.1 NC_005261.1 + 84856 0.66 0.865857
Target:  5'- cCGCGGGCC-GCgUGGccaUGAccgagcGCACGAg -3'
miRNA:   3'- aGCGUCCGGuCGgACCa--AUU------CGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 117058 1.09 0.002031
Target:  5'- uUCGCAGGCCAGCCUGGUUAAGCACGAg -3'
miRNA:   3'- -AGCGUCCGGUCGGACCAAUUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 122342 0.66 0.880647
Target:  5'- cUCGCAGaGCUcGCCUGGc--GGcCGCGGn -3'
miRNA:   3'- -AGCGUC-CGGuCGGACCaauUC-GUGCU- -5'
23572 5' -56.1 NC_005261.1 + 98232 0.66 0.880647
Target:  5'- -gGCGGGCaucgauuuccgCGGCCcGGUgcGGCGCGu -3'
miRNA:   3'- agCGUCCG-----------GUCGGaCCAauUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 71202 0.66 0.880647
Target:  5'- gCGC-GGCCAGCUgcgcgaUGGUgc-GCGCGc -3'
miRNA:   3'- aGCGuCCGGUCGG------ACCAauuCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 75486 0.66 0.879929
Target:  5'- gCGCGGGCCgcuacgagcgcggGGCgCUGG--AGGCGCa- -3'
miRNA:   3'- aGCGUCCGG-------------UCG-GACCaaUUCGUGcu -5'
23572 5' -56.1 NC_005261.1 + 138126 0.66 0.873364
Target:  5'- aCGgGGGCCgcgacGGCCggcGGgauGGCGCGGg -3'
miRNA:   3'- aGCgUCCGG-----UCGGa--CCaauUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 18319 0.66 0.872623
Target:  5'- aCGUAGGUCccgcugucguacaGGCCgGGgcgcAGCACGAg -3'
miRNA:   3'- aGCGUCCGG-------------UCGGaCCaau-UCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 55364 0.66 0.873364
Target:  5'- -gGCAGGcCCAGCCUGGccc-GC-CGc -3'
miRNA:   3'- agCGUCC-GGUCGGACCaauuCGuGCu -5'
23572 5' -56.1 NC_005261.1 + 3596 0.66 0.873364
Target:  5'- gUCGCGGGCCGcGCCaagcagcucagcUGcccgGAGCACGc -3'
miRNA:   3'- -AGCGUCCGGU-CGG------------ACcaa-UUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 60080 0.66 0.880647
Target:  5'- cCGCGGGCU-GCgUGGgcagcAGCACGc -3'
miRNA:   3'- aGCGUCCGGuCGgACCaau--UCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 13339 0.66 0.873364
Target:  5'- cUCGCGcGGCCAGCggucggcggaggCUGGgc-GGCACc- -3'
miRNA:   3'- -AGCGU-CCGGUCG------------GACCaauUCGUGcu -5'
23572 5' -56.1 NC_005261.1 + 17060 0.66 0.880647
Target:  5'- cUCGC-GGCCGuCCUGGaaGGGCgACGGg -3'
miRNA:   3'- -AGCGuCCGGUcGGACCaaUUCG-UGCU- -5'
23572 5' -56.1 NC_005261.1 + 70672 0.66 0.873364
Target:  5'- cCGCGGGCCgcaccuccAGCCagGcGUccAGCGCGGc -3'
miRNA:   3'- aGCGUCCGG--------UCGGa-C-CAauUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 455 0.66 0.873364
Target:  5'- aCGgGGGCCgcgacGGCCggcGGgauGGCGCGGg -3'
miRNA:   3'- aGCgUCCGG-----UCGGa--CCaauUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 3921 0.66 0.865857
Target:  5'- cCGcCGGcGCCGGCCUccgGGUaggccaUGGGCGCGu -3'
miRNA:   3'- aGC-GUC-CGGUCGGA---CCA------AUUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 6445 0.66 0.880647
Target:  5'- cCGgGGGCCGGCCgGGcugcccGCACa- -3'
miRNA:   3'- aGCgUCCGGUCGGaCCaauu--CGUGcu -5'
23572 5' -56.1 NC_005261.1 + 126446 0.66 0.880647
Target:  5'- gCGCaaAGGCCAGCCgcgcc-AGCGCGc -3'
miRNA:   3'- aGCG--UCCGGUCGGaccaauUCGUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.