miRNA display CGI


Results 181 - 200 of 436 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 20180 0.67 0.548155
Target:  5'- uGcCG-CGGCCGCCagcGCGGGCgucgcgGCcGGg -3'
miRNA:   3'- gCaGCuGUCGGCGG---CGCCCGa-----CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 22062 0.67 0.548155
Target:  5'- gCGUCGgggacGCGGCCGCgacCGCGcGCUGCUu- -3'
miRNA:   3'- -GCAGC-----UGUCGGCG---GCGCcCGACGAcc -5'
23573 3' -62.2 NC_005261.1 + 56812 0.67 0.548155
Target:  5'- cCGaCGAC-GCCGCCuGUgccugGGGgaGCUGGg -3'
miRNA:   3'- -GCaGCUGuCGGCGG-CG-----CCCgaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 10901 0.67 0.548155
Target:  5'- cCGcCGcucCGGCCcCCGCGGGCgGCaGGg -3'
miRNA:   3'- -GCaGCu--GUCGGcGGCGCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 34557 0.67 0.548155
Target:  5'- aCGggCGcuCGGCC-UCGCGGGCgucGCUGGa -3'
miRNA:   3'- -GCa-GCu-GUCGGcGGCGCCCGa--CGACC- -5'
23573 3' -62.2 NC_005261.1 + 53658 0.67 0.577076
Target:  5'- ---aGGCGGCCugGCCGCGGGUcGC-GGc -3'
miRNA:   3'- gcagCUGUCGG--CGGCGCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 39876 0.67 0.577076
Target:  5'- --aCGGCcagcaGGCCGCgCGCGcGGCUgugcaGCUGGc -3'
miRNA:   3'- gcaGCUG-----UCGGCG-GCGC-CCGA-----CGACC- -5'
23573 3' -62.2 NC_005261.1 + 89251 0.67 0.577076
Target:  5'- -aUCGAguGCCuGUCguguGCGGGCgacggGCUGGc -3'
miRNA:   3'- gcAGCUguCGG-CGG----CGCCCGa----CGACC- -5'
23573 3' -62.2 NC_005261.1 + 13655 0.67 0.55775
Target:  5'- gCGcCGuGCcGCCGCCGCGGGggggGCgcgGGg -3'
miRNA:   3'- -GCaGC-UGuCGGCGGCGCCCga--CGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 113113 0.67 0.585822
Target:  5'- -cUCGGCAuggacaugcucucGcCCGCCGCGcGGCgGCUGa -3'
miRNA:   3'- gcAGCUGU-------------C-GGCGGCGC-CCGaCGACc -5'
23573 3' -62.2 NC_005261.1 + 130738 0.67 0.577076
Target:  5'- cCGcCGACAuGaUCGCCGC--GCUGCUGGu -3'
miRNA:   3'- -GCaGCUGU-C-GGCGGCGccCGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 71956 0.68 0.529129
Target:  5'- uG-CGACAGCCGCgGgCGcccgguggacGGCgUGCUGGu -3'
miRNA:   3'- gCaGCUGUCGGCGgC-GC----------CCG-ACGACC- -5'
23573 3' -62.2 NC_005261.1 + 51357 0.68 0.514084
Target:  5'- gCG-CGGCcaaGGCCGCCGCGcccGGCggcguugagcgccgGCUGGc -3'
miRNA:   3'- -GCaGCUG---UCGGCGGCGC---CCGa-------------CGACC- -5'
23573 3' -62.2 NC_005261.1 + 37082 0.68 0.519706
Target:  5'- gCGgCGGCGcGCCGCCGCGcGGCaGCc-- -3'
miRNA:   3'- -GCaGCUGU-CGGCGGCGC-CCGaCGacc -5'
23573 3' -62.2 NC_005261.1 + 65464 0.68 0.519706
Target:  5'- gCGUgCG-CGGCCGCCGUgcuGGGCaUGC-GGc -3'
miRNA:   3'- -GCA-GCuGUCGGCGGCG---CCCG-ACGaCC- -5'
23573 3' -62.2 NC_005261.1 + 80939 0.68 0.519706
Target:  5'- aCGUCGcGCGGCUGCuCGCGaGCaGCUGc -3'
miRNA:   3'- -GCAGC-UGUCGGCG-GCGCcCGaCGACc -5'
23573 3' -62.2 NC_005261.1 + 86249 0.68 0.519706
Target:  5'- aGUCGGCGGCggCGCCGCGGuccaGCaGCgcGGc -3'
miRNA:   3'- gCAGCUGUCG--GCGGCGCC----CGaCGa-CC- -5'
23573 3' -62.2 NC_005261.1 + 103183 0.68 0.519706
Target:  5'- cCGcCGcGCGGCCGCCGUuaGGGCgGCg-- -3'
miRNA:   3'- -GCaGC-UGUCGGCGGCG--CCCGaCGacc -5'
23573 3' -62.2 NC_005261.1 + 69077 0.68 0.519706
Target:  5'- gCG-CGGCGGCgCGgUGCGGGUaGUUGGc -3'
miRNA:   3'- -GCaGCUGUCG-GCgGCGCCCGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 24304 0.68 0.529129
Target:  5'- aCGUgCGAgGGUCGCCGCGcccGCUGCcucGGc -3'
miRNA:   3'- -GCA-GCUgUCGGCGGCGCc--CGACGa--CC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.