miRNA display CGI


Results 121 - 140 of 436 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 44423 0.67 0.548155
Target:  5'- gCGgUGGCGGCgGCgCGCGGGCgGCgcGGc -3'
miRNA:   3'- -GCaGCUGUCGgCG-GCGCCCGaCGa-CC- -5'
23573 3' -62.2 NC_005261.1 + 10901 0.67 0.548155
Target:  5'- cCGcCGcucCGGCCcCCGCGGGCgGCaGGg -3'
miRNA:   3'- -GCaGCu--GUCGGcGGCGCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 42490 0.67 0.548155
Target:  5'- --cCGGCGGCgGCgGCGGcGCcGCUGa -3'
miRNA:   3'- gcaGCUGUCGgCGgCGCC-CGaCGACc -5'
23573 3' -62.2 NC_005261.1 + 20534 0.67 0.567392
Target:  5'- gCGcCGGCcucagggccGGCCucGCCGCGGGCccgGCcGGg -3'
miRNA:   3'- -GCaGCUG---------UCGG--CGGCGCCCGa--CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 54637 0.67 0.567392
Target:  5'- gCGgagagCGACgcgcugcuGGCgGCCGCGGGCgccGCgGGc -3'
miRNA:   3'- -GCa----GCUG--------UCGgCGGCGCCCGa--CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 85196 0.67 0.596545
Target:  5'- --cCGACGGCugccccggCGCCGCGGaaGC-GCUGGc -3'
miRNA:   3'- gcaGCUGUCG--------GCGGCGCC--CGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 103111 0.67 0.596545
Target:  5'- gGUgCGAC-GCCGCCG-GcGGCUGggGGg -3'
miRNA:   3'- gCA-GCUGuCGGCGGCgC-CCGACgaCC- -5'
23573 3' -62.2 NC_005261.1 + 117041 0.67 0.586795
Target:  5'- gCGUCcGCGGCCGCgcuCGCGccagcGGCUGCa-- -3'
miRNA:   3'- -GCAGcUGUCGGCG---GCGC-----CCGACGacc -5'
23573 3' -62.2 NC_005261.1 + 56348 0.67 0.586795
Target:  5'- --cUGGCGGCCGCaGgGGGCgGgUGGg -3'
miRNA:   3'- gcaGCUGUCGGCGgCgCCCGaCgACC- -5'
23573 3' -62.2 NC_005261.1 + 83172 0.67 0.586795
Target:  5'- -uUCGGCGGCCGagcucgccggccCCGCGcaGCUGCgcgGGg -3'
miRNA:   3'- gcAGCUGUCGGC------------GGCGCc-CGACGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 12575 0.67 0.583876
Target:  5'- aCGUaUGACGcGCUGCUGgGGgaccgccucaaccaGCUGCUGGa -3'
miRNA:   3'- -GCA-GCUGU-CGGCGGCgCC--------------CGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 52862 0.67 0.582903
Target:  5'- cCGagGGCGGCgGCgcgaacauccucaGCGGGC-GCUGGg -3'
miRNA:   3'- -GCagCUGUCGgCGg------------CGCCCGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 37200 0.67 0.577076
Target:  5'- aCGcgCGGCuGCCgGCCGCGuucacaGGCgcGCUGGa -3'
miRNA:   3'- -GCa-GCUGuCGG-CGGCGC------CCGa-CGACC- -5'
23573 3' -62.2 NC_005261.1 + 67161 0.67 0.577076
Target:  5'- ---gGACGccccGcCCGCCGCGcGGCgGCUGGc -3'
miRNA:   3'- gcagCUGU----C-GGCGGCGC-CCGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 28665 0.67 0.577076
Target:  5'- gCGUCGGCAGCgGCgagGgGGGCcGCggcGGu -3'
miRNA:   3'- -GCAGCUGUCGgCGg--CgCCCGaCGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 4433 0.67 0.577076
Target:  5'- cCGUCGAgCAGCCcgggcgggaugcGCCGCacgaGGGCgUGgaGGc -3'
miRNA:   3'- -GCAGCU-GUCGG------------CGGCG----CCCG-ACgaCC- -5'
23573 3' -62.2 NC_005261.1 + 89590 0.67 0.576105
Target:  5'- cCGggCGGgGGCCGgCGCaggggcgGGGCgugggGCUGGg -3'
miRNA:   3'- -GCa-GCUgUCGGCgGCG-------CCCGa----CGACC- -5'
23573 3' -62.2 NC_005261.1 + 99605 0.67 0.571261
Target:  5'- cCGUCGGCggcgggcucggccgcGGCCaacacccgccaGCCGCGGGCcGCcagcagGGa -3'
miRNA:   3'- -GCAGCUG---------------UCGG-----------CGGCGCCCGaCGa-----CC- -5'
23573 3' -62.2 NC_005261.1 + 61507 0.67 0.567392
Target:  5'- --aCGuCGGCCaGCUGCGGGCaGUUGa -3'
miRNA:   3'- gcaGCuGUCGG-CGGCGCCCGaCGACc -5'
23573 3' -62.2 NC_005261.1 + 136269 0.67 0.600452
Target:  5'- cCGUCgGGCAggcgcacguguaccuGCgCGCCGCGGuGCUGCc-- -3'
miRNA:   3'- -GCAG-CUGU---------------CG-GCGGCGCC-CGACGacc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.