miRNA display CGI


Results 141 - 160 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 56348 0.67 0.586795
Target:  5'- --cUGGCGGCCGCaGgGGGCgGgUGGg -3'
miRNA:   3'- gcaGCUGUCGGCGgCgCCCGaCgACC- -5'
23573 3' -62.2 NC_005261.1 + 39671 0.67 0.596545
Target:  5'- gGagGACGGCCGCCcgccggauuucGCGGGCgcagccuaccgGCcGGa -3'
miRNA:   3'- gCagCUGUCGGCGG-----------CGCCCGa----------CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 85196 0.67 0.596545
Target:  5'- --cCGACGGCugccccggCGCCGCGGaaGC-GCUGGc -3'
miRNA:   3'- gcaGCUGUCG--------GCGGCGCC--CGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 117041 0.67 0.586795
Target:  5'- gCGUCcGCGGCCGCgcuCGCGccagcGGCUGCa-- -3'
miRNA:   3'- -GCAGcUGUCGGCG---GCGC-----CCGACGacc -5'
23573 3' -62.2 NC_005261.1 + 78887 0.67 0.596545
Target:  5'- uCGUggCGACGGCgGCgacccgGCGGGCgcgcacGCUGGc -3'
miRNA:   3'- -GCA--GCUGUCGgCGg-----CGCCCGa-----CGACC- -5'
23573 3' -62.2 NC_005261.1 + 103111 0.67 0.596545
Target:  5'- gGUgCGAC-GCCGCCG-GcGGCUGggGGg -3'
miRNA:   3'- gCA-GCUGuCGGCGGCgC-CCGACgaCC- -5'
23573 3' -62.2 NC_005261.1 + 136269 0.67 0.600452
Target:  5'- cCGUCgGGCAggcgcacguguaccuGCgCGCCGCGGuGCUGCc-- -3'
miRNA:   3'- -GCAG-CUGU---------------CG-GCGGCGCC-CGACGacc -5'
23573 3' -62.2 NC_005261.1 + 12575 0.67 0.583876
Target:  5'- aCGUaUGACGcGCUGCUGgGGgaccgccucaaccaGCUGCUGGa -3'
miRNA:   3'- -GCA-GCUGU-CGGCGGCgCC--------------CGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 52862 0.67 0.582903
Target:  5'- cCGagGGCGGCgGCgcgaacauccucaGCGGGC-GCUGGg -3'
miRNA:   3'- -GCagCUGUCGgCGg------------CGCCCGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 37200 0.67 0.577076
Target:  5'- aCGcgCGGCuGCCgGCCGCGuucacaGGCgcGCUGGa -3'
miRNA:   3'- -GCa-GCUGuCGG-CGGCGC------CCGa-CGACC- -5'
23573 3' -62.2 NC_005261.1 + 115482 0.67 0.545287
Target:  5'- aCG-CGugGGCCGCCGCcGccccgcgcccgacuGGC-GCUGGu -3'
miRNA:   3'- -GCaGCugUCGGCGGCG-C--------------CCGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 103486 0.67 0.574166
Target:  5'- uGUCGagaaacaccaccccGCGGCCGCCaGgGGGCgccgaccGCUGa -3'
miRNA:   3'- gCAGC--------------UGUCGGCGG-CgCCCGa------CGACc -5'
23573 3' -62.2 NC_005261.1 + 28665 0.67 0.577076
Target:  5'- gCGUCGGCAGCgGCgagGgGGGCcGCggcGGu -3'
miRNA:   3'- -GCAGCUGUCGgCGg--CgCCCGaCGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 89590 0.67 0.576105
Target:  5'- cCGggCGGgGGCCGgCGCaggggcgGGGCgugggGCUGGg -3'
miRNA:   3'- -GCa-GCUgUCGGCgGCG-------CCCGa----CGACC- -5'
23573 3' -62.2 NC_005261.1 + 4433 0.67 0.577076
Target:  5'- cCGUCGAgCAGCCcgggcgggaugcGCCGCacgaGGGCgUGgaGGc -3'
miRNA:   3'- -GCAGCU-GUCGG------------CGGCG----CCCG-ACgaCC- -5'
23573 3' -62.2 NC_005261.1 + 67161 0.67 0.577076
Target:  5'- ---gGACGccccGcCCGCCGCGcGGCgGCUGGc -3'
miRNA:   3'- gcagCUGU----C-GGCGGCGC-CCGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 54144 0.67 0.596545
Target:  5'- aCGcCGcacGCGGCCGUgCGCgGGGUUGCcGGg -3'
miRNA:   3'- -GCaGC---UGUCGGCG-GCG-CCCGACGaCC- -5'
23573 3' -62.2 NC_005261.1 + 44307 0.67 0.600452
Target:  5'- ---gGGCcGCUGcCCGCGGGCgccgcagacgggggGCUGGg -3'
miRNA:   3'- gcagCUGuCGGC-GGCGCCCGa-------------CGACC- -5'
23573 3' -62.2 NC_005261.1 + 31752 0.67 0.600452
Target:  5'- cCGUCgGGCAggcgcacguguaccuGCgCGCCGCGGuGCUGCc-- -3'
miRNA:   3'- -GCAG-CUGU---------------CG-GCGGCGCC-CGACGacc -5'
23573 3' -62.2 NC_005261.1 + 99605 0.67 0.571261
Target:  5'- cCGUCGGCggcgggcucggccgcGGCCaacacccgccaGCCGCGGGCcGCcagcagGGa -3'
miRNA:   3'- -GCAGCUG---------------UCGG-----------CGGCGCCCGaCGa-----CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.