miRNA display CGI


Results 161 - 180 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 54144 0.67 0.596545
Target:  5'- aCGcCGcacGCGGCCGUgCGCgGGGUUGCcGGg -3'
miRNA:   3'- -GCaGC---UGUCGGCG-GCG-CCCGACGaCC- -5'
23573 3' -62.2 NC_005261.1 + 44307 0.67 0.600452
Target:  5'- ---gGGCcGCUGcCCGCGGGCgccgcagacgggggGCUGGg -3'
miRNA:   3'- gcagCUGuCGGC-GGCGCCCGa-------------CGACC- -5'
23573 3' -62.2 NC_005261.1 + 91721 0.67 0.567392
Target:  5'- gGcCGGCucGCCGCgGCGGGCUucGC-GGc -3'
miRNA:   3'- gCaGCUGu-CGGCGgCGCCCGA--CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 74277 0.67 0.567392
Target:  5'- gCGUCcgcggcgggcggGGCGGUCGCCGcCGGGCaGCa-- -3'
miRNA:   3'- -GCAG------------CUGUCGGCGGC-GCCCGaCGacc -5'
23573 3' -62.2 NC_005261.1 + 33816 0.67 0.567392
Target:  5'- uGUCuuugGGCGGCCGgggggCGCGGGCccccuggcGCUGGg -3'
miRNA:   3'- gCAG----CUGUCGGCg----GCGCCCGa-------CGACC- -5'
23573 3' -62.2 NC_005261.1 + 34557 0.67 0.548155
Target:  5'- aCGggCGcuCGGCC-UCGCGGGCgucGCUGGa -3'
miRNA:   3'- -GCa-GCu-GUCGGcGGCGCCCGa--CGACC- -5'
23573 3' -62.2 NC_005261.1 + 10901 0.67 0.548155
Target:  5'- cCGcCGcucCGGCCcCCGCGGGCgGCaGGg -3'
miRNA:   3'- -GCaGCu--GUCGGcGGCGCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 56812 0.67 0.548155
Target:  5'- cCGaCGAC-GCCGCCuGUgccugGGGgaGCUGGg -3'
miRNA:   3'- -GCaGCUGuCGGCGG-CG-----CCCgaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 22062 0.67 0.548155
Target:  5'- gCGUCGgggacGCGGCCGCgacCGCGcGCUGCUu- -3'
miRNA:   3'- -GCAGC-----UGUCGGCG---GCGCcCGACGAcc -5'
23573 3' -62.2 NC_005261.1 + 20180 0.67 0.548155
Target:  5'- uGcCG-CGGCCGCCagcGCGGGCgucgcgGCcGGg -3'
miRNA:   3'- gCaGCuGUCGGCGG---CGCCCGa-----CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 13960 0.67 0.548155
Target:  5'- uGUCG-CGGCCggGCgCGCGGGCgGCg-- -3'
miRNA:   3'- gCAGCuGUCGG--CG-GCGCCCGaCGacc -5'
23573 3' -62.2 NC_005261.1 + 77928 0.67 0.548155
Target:  5'- uCGUCu-CAGCCGacugcCUGCGGGCcGCgGGg -3'
miRNA:   3'- -GCAGcuGUCGGC-----GGCGCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 6824 0.67 0.548155
Target:  5'- uGcCGGCAGCgGCgGgGGGCUcGgUGGc -3'
miRNA:   3'- gCaGCUGUCGgCGgCgCCCGA-CgACC- -5'
23573 3' -62.2 NC_005261.1 + 135488 0.67 0.546243
Target:  5'- cCG-CGACGGcCCGCCGCGGcGCaagcgcaagucgGCcGGg -3'
miRNA:   3'- -GCaGCUGUC-GGCGGCGCC-CGa-----------CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 115482 0.67 0.545287
Target:  5'- aCG-CGugGGCCGCCGCcGccccgcgcccgacuGGC-GCUGGu -3'
miRNA:   3'- -GCaGCugUCGGCGGCG-C--------------CCGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 33352 0.67 0.55775
Target:  5'- cCGcCGcCAccGCCGCCGggccgcgcCGGGCUGCgGGc -3'
miRNA:   3'- -GCaGCuGU--CGGCGGC--------GCCCGACGaCC- -5'
23573 3' -62.2 NC_005261.1 + 66768 0.67 0.55775
Target:  5'- cCGggUGugGcCCGUCGCgcgcgaucauGGGCUGCUGGa -3'
miRNA:   3'- -GCa-GCugUcGGCGGCG----------CCCGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 48835 0.67 0.567392
Target:  5'- uCGUCGGCcccGCCGCCGCGcagcaGGCccaGCgcccGGg -3'
miRNA:   3'- -GCAGCUGu--CGGCGGCGC-----CCGa--CGa---CC- -5'
23573 3' -62.2 NC_005261.1 + 76149 0.67 0.567392
Target:  5'- gGUCGugGCGGCgcacgaCGCCGUGGcGCUGCa-- -3'
miRNA:   3'- gCAGC--UGUCG------GCGGCGCC-CGACGacc -5'
23573 3' -62.2 NC_005261.1 + 31752 0.67 0.600452
Target:  5'- cCGUCgGGCAggcgcacguguaccuGCgCGCCGCGGuGCUGCc-- -3'
miRNA:   3'- -GCAG-CUGU---------------CG-GCGGCGCC-CGACGacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.