miRNA display CGI


Results 81 - 100 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 32270 0.71 0.372565
Target:  5'- aCGcCGAgGcGCCGCCGCuGG-UGCUGGa -3'
miRNA:   3'- -GCaGCUgU-CGGCGGCGcCCgACGACC- -5'
23573 3' -62.2 NC_005261.1 + 134711 0.71 0.348933
Target:  5'- ---aGGCGGCCGCCGCGcuggagcGGCcgcGCUGGc -3'
miRNA:   3'- gcagCUGUCGGCGGCGC-------CCGa--CGACC- -5'
23573 3' -62.2 NC_005261.1 + 44275 0.71 0.357195
Target:  5'- gCGUCGACGGCCGaCCGCccggaGGCgGCg-- -3'
miRNA:   3'- -GCAGCUGUCGGC-GGCGc----CCGaCGacc -5'
23573 3' -62.2 NC_005261.1 + 136787 0.71 0.372565
Target:  5'- aCGcCGAgGcGCCGCCGCuGG-UGCUGGa -3'
miRNA:   3'- -GCaGCUgU-CGGCGGCGcCCgACGACC- -5'
23573 3' -62.2 NC_005261.1 + 131759 0.71 0.364824
Target:  5'- aCGcCGGCcGgCGCgGCGGGCgcgccGCUGGg -3'
miRNA:   3'- -GCaGCUGuCgGCGgCGCCCGa----CGACC- -5'
23573 3' -62.2 NC_005261.1 + 104153 0.71 0.357195
Target:  5'- gGUCGGCcaccgcGCCGuCCGCGGGCgccGCgcgcGGg -3'
miRNA:   3'- gCAGCUGu-----CGGC-GGCGCCCGa--CGa---CC- -5'
23573 3' -62.2 NC_005261.1 + 55121 0.71 0.372565
Target:  5'- gCGgcuggCGGCGGCgGCgGCGGcGCUGgaGGc -3'
miRNA:   3'- -GCa----GCUGUCGgCGgCGCC-CGACgaCC- -5'
23573 3' -62.2 NC_005261.1 + 33163 0.71 0.372565
Target:  5'- aGUCGGCGGaccCUGCCG-GGGaggGCUGGg -3'
miRNA:   3'- gCAGCUGUC---GGCGGCgCCCga-CGACC- -5'
23573 3' -62.2 NC_005261.1 + 38834 0.71 0.357953
Target:  5'- uCGUgCGGCAGCCGCCcaGCGaGGUgcagacggucaacgcGCUGGa -3'
miRNA:   3'- -GCA-GCUGUCGGCGG--CGC-CCGa--------------CGACC- -5'
23573 3' -62.2 NC_005261.1 + 42687 0.71 0.342275
Target:  5'- cCGcCGGCAGCCG-CGCGGccgccaGCUGCcGGa -3'
miRNA:   3'- -GCaGCUGUCGGCgGCGCC------CGACGaCC- -5'
23573 3' -62.2 NC_005261.1 + 3815 0.71 0.342275
Target:  5'- cCGcUCG-CGcGCUGCCGCGGGCccgggcGCUGGc -3'
miRNA:   3'- -GC-AGCuGU-CGGCGGCGCCCGa-----CGACC- -5'
23573 3' -62.2 NC_005261.1 + 132604 0.71 0.334986
Target:  5'- cCGgccCGGCgAGCCGCCaGgGGGC-GCUGGc -3'
miRNA:   3'- -GCa--GCUG-UCGGCGG-CgCCCGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 50990 0.71 0.334986
Target:  5'- gGcCGACGGCgGCgCGUGGGCgcgGCgGGa -3'
miRNA:   3'- gCaGCUGUCGgCG-GCGCCCGa--CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 28854 0.71 0.334986
Target:  5'- cCGUCG-UGGCCGCCGCccuugaGGCUGCggcgcGGa -3'
miRNA:   3'- -GCAGCuGUCGGCGGCGc-----CCGACGa----CC- -5'
23573 3' -62.2 NC_005261.1 + 51316 0.71 0.334263
Target:  5'- aCGcCGGCGccGCCGCCGCcuucgucGGGCUcuucugcaccGCUGGg -3'
miRNA:   3'- -GCaGCUGU--CGGCGGCG-------CCCGA----------CGACC- -5'
23573 3' -62.2 NC_005261.1 + 127733 0.71 0.375692
Target:  5'- aG-CGGCGGCCGCCGCaaaagccggugcagcGGGCcggccUGCUcGGg -3'
miRNA:   3'- gCaGCUGUCGGCGGCG---------------CCCG-----ACGA-CC- -5'
23573 3' -62.2 NC_005261.1 + 87450 0.71 0.357195
Target:  5'- cCGgggCGGCcGCCGCCGCGGuGUgcGCUGa -3'
miRNA:   3'- -GCa--GCUGuCGGCGGCGCC-CGa-CGACc -5'
23573 3' -62.2 NC_005261.1 + 129441 0.71 0.357195
Target:  5'- uCGgCGgcuGCAGCCGCCGagGGGCagaGCUGGc -3'
miRNA:   3'- -GCaGC---UGUCGGCGGCg-CCCGa--CGACC- -5'
23573 3' -62.2 NC_005261.1 + 70751 0.71 0.357195
Target:  5'- --cUGGCGGCgGCCGCGGGCUuccuguacGCgGGc -3'
miRNA:   3'- gcaGCUGUCGgCGGCGCCCGA--------CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 6754 0.71 0.357195
Target:  5'- gCGUCGACGGCgCGCuCGCGGagGCgGgaGGc -3'
miRNA:   3'- -GCAGCUGUCG-GCG-GCGCC--CGaCgaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.