miRNA display CGI


Results 101 - 120 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 108332 0.71 0.342275
Target:  5'- cCGcUCG-CGcGCUGCCGCGGGCccgggcGCUGGc -3'
miRNA:   3'- -GC-AGCuGU-CGGCGGCGCCCGa-----CGACC- -5'
23573 3' -62.2 NC_005261.1 + 89358 0.71 0.342275
Target:  5'- -uUCGGCGGCugCGCCGCcauggcccGGGC-GCUGGg -3'
miRNA:   3'- gcAGCUGUCG--GCGGCG--------CCCGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 91978 0.71 0.342275
Target:  5'- aCGgucgCGGCcGCCGCCGCGGcCUGCg-- -3'
miRNA:   3'- -GCa---GCUGuCGGCGGCGCCcGACGacc -5'
23573 3' -62.2 NC_005261.1 + 104769 0.71 0.342275
Target:  5'- cCGgcugCGGCGGCgGCUGCGGGgCgGCUGcGg -3'
miRNA:   3'- -GCa---GCUGUCGgCGGCGCCC-GaCGAC-C- -5'
23573 3' -62.2 NC_005261.1 + 134711 0.71 0.348933
Target:  5'- ---aGGCGGCCGCCGCGcuggagcGGCcgcGCUGGc -3'
miRNA:   3'- gcagCUGUCGGCGGCGC-------CCGa--CGACC- -5'
23573 3' -62.2 NC_005261.1 + 129441 0.71 0.357195
Target:  5'- uCGgCGgcuGCAGCCGCCGagGGGCagaGCUGGc -3'
miRNA:   3'- -GCaGC---UGUCGGCGGCg-CCCGa--CGACC- -5'
23573 3' -62.2 NC_005261.1 + 103451 0.7 0.388378
Target:  5'- uCG-CGGuCGGCCGCCGCgcccgucgccaGGGCguccaGCUGGc -3'
miRNA:   3'- -GCaGCU-GUCGGCGGCG-----------CCCGa----CGACC- -5'
23573 3' -62.2 NC_005261.1 + 62294 0.7 0.380417
Target:  5'- aCGUCGGC-GCCG-CGCGGGCgcgcgGC-GGc -3'
miRNA:   3'- -GCAGCUGuCGGCgGCGCCCGa----CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 293 0.7 0.396449
Target:  5'- gCGgCGGCGGCUGCgGCGgcGGCUGCggcGGc -3'
miRNA:   3'- -GCaGCUGUCGGCGgCGC--CCGACGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 137976 0.7 0.396449
Target:  5'- gCGgCGGCGGCUGCgGCGgcGGCUGCggcGGc -3'
miRNA:   3'- -GCaGCUGUCGGCGgCGC--CCGACGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 137940 0.7 0.396449
Target:  5'- gCGgCGGCGGCUGCgGCGgcGGCUGCggcGGc -3'
miRNA:   3'- -GCaGCUGUCGGCGgCGC--CCGACGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 70860 0.7 0.412909
Target:  5'- gGUCcagGGCGGCCGCCGUGGcGUgGCcGGc -3'
miRNA:   3'- gCAG---CUGUCGGCGGCGCC-CGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 257 0.7 0.396449
Target:  5'- gCGgCGGCGGCUGCgGCGgcGGCUGCggcGGc -3'
miRNA:   3'- -GCaGCUGUCGGCGgCGC--CCGACGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 108312 0.7 0.412909
Target:  5'- gCGUCccaGACGGCCGCCGCGuGCUccGCg-- -3'
miRNA:   3'- -GCAG---CUGUCGGCGGCGCcCGA--CGacc -5'
23573 3' -62.2 NC_005261.1 + 118869 0.7 0.412909
Target:  5'- cCG-CGGCccuggccucGGCCaCCGCGGGCgcGCUGGu -3'
miRNA:   3'- -GCaGCUG---------UCGGcGGCGCCCGa-CGACC- -5'
23573 3' -62.2 NC_005261.1 + 34727 0.7 0.395637
Target:  5'- gGUCGGCgcccccuGGCgGCCGCGGGgUGgUGu -3'
miRNA:   3'- gCAGCUG-------UCGgCGGCGCCCgACgACc -5'
23573 3' -62.2 NC_005261.1 + 91426 0.7 0.420453
Target:  5'- gCG-CGAC-GCCGCCGCGGugaacgcGCUGCgcGGc -3'
miRNA:   3'- -GCaGCUGuCGGCGGCGCC-------CGACGa-CC- -5'
23573 3' -62.2 NC_005261.1 + 104883 0.7 0.388378
Target:  5'- gCGUCGAUcGCCGCCGCGuGC-GCccGGa -3'
miRNA:   3'- -GCAGCUGuCGGCGGCGCcCGaCGa-CC- -5'
23573 3' -62.2 NC_005261.1 + 33599 0.7 0.388378
Target:  5'- aGgggCGGC-GCCGgCGCGGGCgGCgGGg -3'
miRNA:   3'- gCa--GCUGuCGGCgGCGCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 110317 0.7 0.404626
Target:  5'- aGUaCGGCAaccgcGCCGCCGCGGacgcGCUGCg-- -3'
miRNA:   3'- gCA-GCUGU-----CGGCGGCGCC----CGACGacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.