Results 141 - 160 of 436 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23573 | 3' | -62.2 | NC_005261.1 | + | 72190 | 0.7 | 0.412909 |
Target: 5'- aCGUUGGCGGCgGCCGCGcGCgGCa-- -3' miRNA: 3'- -GCAGCUGUCGgCGGCGCcCGaCGacc -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 58533 | 0.7 | 0.412909 |
Target: 5'- -aUCGAgccCAGCCGCCGCccGGGCUcCUGc -3' miRNA: 3'- gcAGCU---GUCGGCGGCG--CCCGAcGACc -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 61023 | 0.69 | 0.429785 |
Target: 5'- cCGUCGugGGgCGgcaCCGCGGcaGCUgGCUGGu -3' miRNA: 3'- -GCAGCugUCgGC---GGCGCC--CGA-CGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 106572 | 0.69 | 0.429785 |
Target: 5'- gCGcCGGCcccggGGCCGCCGCGcGGCgcuccucCUGGa -3' miRNA: 3'- -GCaGCUG-----UCGGCGGCGC-CCGac-----GACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 60086 | 0.69 | 0.473677 |
Target: 5'- cCGgcagCGGCGGgCGCCG-GGGCgGCgGGg -3' miRNA: 3'- -GCa---GCUGUCgGCGGCgCCCGaCGaCC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 32003 | 0.69 | 0.44706 |
Target: 5'- gCG-CGGCGGCCgcgccaggcgGCCGCGGGC-GCUu- -3' miRNA: 3'- -GCaGCUGUCGG----------CGGCGCCCGaCGAcc -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 79684 | 0.69 | 0.455841 |
Target: 5'- --aCGACGGCgcaggaGCC-CGGGCggcgGCUGGg -3' miRNA: 3'- gcaGCUGUCGg-----CGGcGCCCGa---CGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 91548 | 0.69 | 0.464714 |
Target: 5'- cCGU-GGCGGCCGCCGUGGaGC-GCgcGGc -3' miRNA: 3'- -GCAgCUGUCGGCGGCGCC-CGaCGa-CC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 88933 | 0.69 | 0.464714 |
Target: 5'- gCG-CGGCGcucaCCGCCGCGGGCUuCUGc -3' miRNA: 3'- -GCaGCUGUc---GGCGGCGCCCGAcGACc -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 136745 | 0.69 | 0.464714 |
Target: 5'- cCG-CGGCGGUgGCCuucugcGCGGccgcGCUGCUGGa -3' miRNA: 3'- -GCaGCUGUCGgCGG------CGCC----CGACGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 128128 | 0.69 | 0.468289 |
Target: 5'- uGUCGccGCcGCUGCCGgggcgcggcggggguCGGGCgGCUGGa -3' miRNA: 3'- gCAGC--UGuCGGCGGC---------------GCCCGaCGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 34848 | 0.69 | 0.470081 |
Target: 5'- ---aGGCGGCCGCgGCGcGGCggcgcgcggccgaGCUGGg -3' miRNA: 3'- gcagCUGUCGGCGgCGC-CCGa------------CGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 16835 | 0.69 | 0.472776 |
Target: 5'- cCGUCGcacucgggcaggcGCcGCCGCCGCGGGgcgcCUGCa-- -3' miRNA: 3'- -GCAGC-------------UGuCGGCGGCGCCC----GACGacc -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 78111 | 0.69 | 0.44706 |
Target: 5'- uGUUcGCGGCCuacgugcCCGCGGGCgcGCUGGc -3' miRNA: 3'- gCAGcUGUCGGc------GGCGCCCGa-CGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 36063 | 0.69 | 0.438374 |
Target: 5'- -aUCGACGugccGCCGCCGCuGGCgcaGCUGc -3' miRNA: 3'- gcAGCUGU----CGGCGGCGcCCGa--CGACc -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 67412 | 0.69 | 0.428932 |
Target: 5'- gCGcCGGCgcgcccggGGCCGCCggcGCGGacuuugaGCUGCUGGa -3' miRNA: 3'- -GCaGCUG--------UCGGCGG---CGCC-------CGACGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 133770 | 0.69 | 0.437511 |
Target: 5'- gCG-CGACgGGCCGCCGCcgcuggaGGGCccgcUGCUGa -3' miRNA: 3'- -GCaGCUG-UCGGCGGCG-------CCCG----ACGACc -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 33867 | 0.69 | 0.429785 |
Target: 5'- gGcCGGCGGCUGUucuCGCGGGCggcGCUGc -3' miRNA: 3'- gCaGCUGUCGGCG---GCGCCCGa--CGACc -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 55678 | 0.69 | 0.429785 |
Target: 5'- uG-CGGCGcGCgGCCGCGGGCgaGgaGGg -3' miRNA: 3'- gCaGCUGU-CGgCGGCGCCCGa-CgaCC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 102625 | 0.69 | 0.429785 |
Target: 5'- --aCGGCuGCCGCgGCGGGgCcgggcGCUGGg -3' miRNA: 3'- gcaGCUGuCGGCGgCGCCC-Ga----CGACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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