miRNA display CGI


Results 181 - 200 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 84953 0.69 0.473677
Target:  5'- -cUCGGCGGCCGCCGaggcguCGGGC-GCg-- -3'
miRNA:   3'- gcAGCUGUCGGCGGC------GCCCGaCGacc -5'
23573 3' -62.2 NC_005261.1 + 60086 0.69 0.473677
Target:  5'- cCGgcagCGGCGGgCGCCG-GGGCgGCgGGg -3'
miRNA:   3'- -GCa---GCUGUCgGCGGCgCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 59468 0.69 0.477286
Target:  5'- gCGUCGgggggcagcgccggcGCGGCCGCCGCGccagcGGCgGC-GGu -3'
miRNA:   3'- -GCAGC---------------UGUCGGCGGCGC-----CCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 59062 0.68 0.482725
Target:  5'- -uUCGGCGcGCUgGCCaCgGGGCUGCUGGu -3'
miRNA:   3'- gcAGCUGU-CGG-CGGcG-CCCGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 126027 0.68 0.482725
Target:  5'- gCGgCGGCGGCaccgGCgGCGGcGCUGCaUGGu -3'
miRNA:   3'- -GCaGCUGUCGg---CGgCGCC-CGACG-ACC- -5'
23573 3' -62.2 NC_005261.1 + 113576 0.68 0.482725
Target:  5'- gGUCGGUGGCCGCCGCgcuGGGCgaccucGCgcccGGg -3'
miRNA:   3'- gCAGCUGUCGGCGGCG---CCCGa-----CGa---CC- -5'
23573 3' -62.2 NC_005261.1 + 75195 0.68 0.482725
Target:  5'- gCG-CGACcGCCucGCCGCGGGC-GCcGGc -3'
miRNA:   3'- -GCaGCUGuCGG--CGGCGCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 25097 0.68 0.482725
Target:  5'- aCGUU--CAGCCGCCGCGcGGCggGCg-- -3'
miRNA:   3'- -GCAGcuGUCGGCGGCGC-CCGa-CGacc -5'
23573 3' -62.2 NC_005261.1 + 106904 0.68 0.482725
Target:  5'- gCGUCGucCGcGCCGCgGCGcGCUGCaGGg -3'
miRNA:   3'- -GCAGCu-GU-CGGCGgCGCcCGACGaCC- -5'
23573 3' -62.2 NC_005261.1 + 107714 0.68 0.482725
Target:  5'- aCGUCG-CuGCCGCgGCaGGCgGCUGc -3'
miRNA:   3'- -GCAGCuGuCGGCGgCGcCCGaCGACc -5'
23573 3' -62.2 NC_005261.1 + 137056 0.68 0.482725
Target:  5'- cCGUCGGCAGgCGCggaggCGCGGGCacccaUGGc -3'
miRNA:   3'- -GCAGCUGUCgGCG-----GCGCCCGacg--ACC- -5'
23573 3' -62.2 NC_005261.1 + 9500 0.68 0.482725
Target:  5'- uGcCGACAGCUaCgGCGGGCggGCgGGg -3'
miRNA:   3'- gCaGCUGUCGGcGgCGCCCGa-CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 127680 0.68 0.482725
Target:  5'- aCGgCGGCGGCCGCUGCcccGGCgGCgccGGa -3'
miRNA:   3'- -GCaGCUGUCGGCGGCGc--CCGaCGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 12528 0.68 0.491855
Target:  5'- cCG-CGGCGGCCGUCGCcGGGCcaaGCccGGc -3'
miRNA:   3'- -GCaGCUGUCGGCGGCG-CCCGa--CGa-CC- -5'
23573 3' -62.2 NC_005261.1 + 22801 0.68 0.491855
Target:  5'- uGUCG-CGGCCgGCgGCGGcGCUGCc-- -3'
miRNA:   3'- gCAGCuGUCGG-CGgCGCC-CGACGacc -5'
23573 3' -62.2 NC_005261.1 + 34781 0.68 0.491855
Target:  5'- aCGggcgCGGCGGCCGaCCGCGaGGCgcgcgcgcGCgUGGc -3'
miRNA:   3'- -GCa---GCUGUCGGC-GGCGC-CCGa-------CG-ACC- -5'
23573 3' -62.2 NC_005261.1 + 32290 0.68 0.491855
Target:  5'- -aUCGACGGCgCGCuCGCggaGGGCgcgGCgUGGg -3'
miRNA:   3'- gcAGCUGUCG-GCG-GCG---CCCGa--CG-ACC- -5'
23573 3' -62.2 NC_005261.1 + 127318 0.68 0.491855
Target:  5'- uGUCG-CGGCCgGCgGCGGcGCUGCc-- -3'
miRNA:   3'- gCAGCuGUCGG-CGgCGCC-CGACGacc -5'
23573 3' -62.2 NC_005261.1 + 31113 0.68 0.501065
Target:  5'- cCGUCGcCGG-CGCgGUGGcGCgGCUGGg -3'
miRNA:   3'- -GCAGCuGUCgGCGgCGCC-CGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 123696 0.68 0.501065
Target:  5'- gGUCGccggGCGGCCGCgccacCGcCGGGCUGUuaaauUGGu -3'
miRNA:   3'- gCAGC----UGUCGGCG-----GC-GCCCGACG-----ACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.