Results 81 - 100 of 436 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23573 | 3' | -62.2 | NC_005261.1 | + | 85863 | 0.71 | 0.334986 |
Target: 5'- cCGg-GGCcGCCGCCGCGGGCUccgGCUccGGc -3' miRNA: 3'- -GCagCUGuCGGCGGCGCCCGA---CGA--CC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 3815 | 0.71 | 0.342275 |
Target: 5'- cCGcUCG-CGcGCUGCCGCGGGCccgggcGCUGGc -3' miRNA: 3'- -GC-AGCuGU-CGGCGGCGCCCGa-----CGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 91978 | 0.71 | 0.342275 |
Target: 5'- aCGgucgCGGCcGCCGCCGCGGcCUGCg-- -3' miRNA: 3'- -GCa---GCUGuCGGCGGCGCCcGACGacc -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 108332 | 0.71 | 0.342275 |
Target: 5'- cCGcUCG-CGcGCUGCCGCGGGCccgggcGCUGGc -3' miRNA: 3'- -GC-AGCuGU-CGGCGGCGCCCGa-----CGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 104769 | 0.71 | 0.342275 |
Target: 5'- cCGgcugCGGCGGCgGCUGCGGGgCgGCUGcGg -3' miRNA: 3'- -GCa---GCUGUCGgCGGCGCCC-GaCGAC-C- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 89358 | 0.71 | 0.342275 |
Target: 5'- -uUCGGCGGCugCGCCGCcauggcccGGGC-GCUGGg -3' miRNA: 3'- gcAGCUGUCG--GCGGCG--------CCCGaCGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 42687 | 0.71 | 0.342275 |
Target: 5'- cCGcCGGCAGCCG-CGCGGccgccaGCUGCcGGa -3' miRNA: 3'- -GCaGCUGUCGGCgGCGCC------CGACGaCC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 134711 | 0.71 | 0.348933 |
Target: 5'- ---aGGCGGCCGCCGCGcuggagcGGCcgcGCUGGc -3' miRNA: 3'- gcagCUGUCGGCGGCGC-------CCGa--CGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 129441 | 0.71 | 0.357195 |
Target: 5'- uCGgCGgcuGCAGCCGCCGagGGGCagaGCUGGc -3' miRNA: 3'- -GCaGC---UGUCGGCGGCg-CCCGa--CGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 70751 | 0.71 | 0.357195 |
Target: 5'- --cUGGCGGCgGCCGCGGGCUuccuguacGCgGGc -3' miRNA: 3'- gcaGCUGUCGgCGGCGCCCGA--------CGaCC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 87450 | 0.71 | 0.357195 |
Target: 5'- cCGgggCGGCcGCCGCCGCGGuGUgcGCUGa -3' miRNA: 3'- -GCa--GCUGuCGGCGGCGCC-CGa-CGACc -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 6754 | 0.71 | 0.357195 |
Target: 5'- gCGUCGACGGCgCGCuCGCGGagGCgGgaGGc -3' miRNA: 3'- -GCAGCUGUCG-GCG-GCGCC--CGaCgaCC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 104153 | 0.71 | 0.357195 |
Target: 5'- gGUCGGCcaccgcGCCGuCCGCGGGCgccGCgcgcGGg -3' miRNA: 3'- gCAGCUGu-----CGGC-GGCGCCCGa--CGa---CC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 44275 | 0.71 | 0.357195 |
Target: 5'- gCGUCGACGGCCGaCCGCccggaGGCgGCg-- -3' miRNA: 3'- -GCAGCUGUCGGC-GGCGc----CCGaCGacc -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 81433 | 0.71 | 0.357195 |
Target: 5'- gCGUCGuCGGCCGCCccgcgGCGGGCgccgccagcaGCaGGg -3' miRNA: 3'- -GCAGCuGUCGGCGG-----CGCCCGa---------CGaCC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 38936 | 0.71 | 0.357195 |
Target: 5'- aGcCGGCGGCCgggcgggccgcgGCgCGCGGGCUGCg-- -3' miRNA: 3'- gCaGCUGUCGG------------CG-GCGCCCGACGacc -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 47443 | 0.71 | 0.357195 |
Target: 5'- aCGUcCGACAGgCGCCcggcccgcuugcGCGGGg-GCUGGg -3' miRNA: 3'- -GCA-GCUGUCgGCGG------------CGCCCgaCGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 86922 | 0.71 | 0.357195 |
Target: 5'- gCGUCcaccGCcGCCGCCGCGcgcGGCggGCUGGu -3' miRNA: 3'- -GCAGc---UGuCGGCGGCGC---CCGa-CGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 38834 | 0.71 | 0.357953 |
Target: 5'- uCGUgCGGCAGCCGCCcaGCGaGGUgcagacggucaacgcGCUGGa -3' miRNA: 3'- -GCA-GCUGUCGGCGG--CGC-CCGa--------------CGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 131759 | 0.71 | 0.364824 |
Target: 5'- aCGcCGGCcGgCGCgGCGGGCgcgccGCUGGg -3' miRNA: 3'- -GCaGCUGuCgGCGgCGCCCGa----CGACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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