miRNA display CGI


Results 101 - 120 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 136787 0.71 0.372565
Target:  5'- aCGcCGAgGcGCCGCCGCuGG-UGCUGGa -3'
miRNA:   3'- -GCaGCUgU-CGGCGGCGcCCgACGACC- -5'
23573 3' -62.2 NC_005261.1 + 55121 0.71 0.372565
Target:  5'- gCGgcuggCGGCGGCgGCgGCGGcGCUGgaGGc -3'
miRNA:   3'- -GCa----GCUGUCGgCGgCGCC-CGACgaCC- -5'
23573 3' -62.2 NC_005261.1 + 54349 0.71 0.372565
Target:  5'- gGUCGAUGGCCagucccagGuCCGCGGGCagcgGCUcGGg -3'
miRNA:   3'- gCAGCUGUCGG--------C-GGCGCCCGa---CGA-CC- -5'
23573 3' -62.2 NC_005261.1 + 32270 0.71 0.372565
Target:  5'- aCGcCGAgGcGCCGCCGCuGG-UGCUGGa -3'
miRNA:   3'- -GCaGCUgU-CGGCGGCGcCCgACGACC- -5'
23573 3' -62.2 NC_005261.1 + 33163 0.71 0.372565
Target:  5'- aGUCGGCGGaccCUGCCG-GGGaggGCUGGg -3'
miRNA:   3'- gCAGCUGUC---GGCGGCgCCCga-CGACC- -5'
23573 3' -62.2 NC_005261.1 + 127733 0.71 0.375692
Target:  5'- aG-CGGCGGCCGCCGCaaaagccggugcagcGGGCcggccUGCUcGGg -3'
miRNA:   3'- gCaGCUGUCGGCGGCG---------------CCCG-----ACGA-CC- -5'
23573 3' -62.2 NC_005261.1 + 58704 0.7 0.380417
Target:  5'- aCGUgCGGCGGgucCCGCuCGCGGaGCUGgaGGu -3'
miRNA:   3'- -GCA-GCUGUC---GGCG-GCGCC-CGACgaCC- -5'
23573 3' -62.2 NC_005261.1 + 62294 0.7 0.380417
Target:  5'- aCGUCGGC-GCCG-CGCGGGCgcgcgGC-GGc -3'
miRNA:   3'- -GCAGCUGuCGGCgGCGCCCGa----CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 433 0.7 0.388378
Target:  5'- aGgggCGGC-GCCGgCGCGGGCgGCgGGg -3'
miRNA:   3'- gCa--GCUGuCGGCgGCGCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 104883 0.7 0.388378
Target:  5'- gCGUCGAUcGCCGCCGCGuGC-GCccGGa -3'
miRNA:   3'- -GCAGCUGuCGGCGGCGCcCGaCGa-CC- -5'
23573 3' -62.2 NC_005261.1 + 33599 0.7 0.388378
Target:  5'- aGgggCGGC-GCCGgCGCGGGCgGCgGGg -3'
miRNA:   3'- gCa--GCUGuCGGCgGCGCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 103451 0.7 0.388378
Target:  5'- uCG-CGGuCGGCCGCCGCgcccgucgccaGGGCguccaGCUGGc -3'
miRNA:   3'- -GCaGCU-GUCGGCGGCG-----------CCCGa----CGACC- -5'
23573 3' -62.2 NC_005261.1 + 138116 0.7 0.388378
Target:  5'- aGgggCGGC-GCCGgCGCGGGCgGCgGGg -3'
miRNA:   3'- gCa--GCUGuCGGCgGCGCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 56613 0.7 0.388378
Target:  5'- uCG-CGGCGGugcugaacCCGCCGCGGGC-GCcGGa -3'
miRNA:   3'- -GCaGCUGUC--------GGCGGCGCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 88189 0.7 0.395637
Target:  5'- uCG-CGGCGGCgcugcacCGUCGCGcGGCgGCUGGg -3'
miRNA:   3'- -GCaGCUGUCG-------GCGGCGC-CCGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 34727 0.7 0.395637
Target:  5'- gGUCGGCgcccccuGGCgGCCGCGGGgUGgUGu -3'
miRNA:   3'- gCAGCUG-------UCGgCGGCGCCCgACgACc -5'
23573 3' -62.2 NC_005261.1 + 293 0.7 0.396449
Target:  5'- gCGgCGGCGGCUGCgGCGgcGGCUGCggcGGc -3'
miRNA:   3'- -GCaGCUGUCGGCGgCGC--CCGACGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 128143 0.7 0.396449
Target:  5'- aGgCGACGGUCGCCG-GGGCcGCgGGc -3'
miRNA:   3'- gCaGCUGUCGGCGGCgCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 137940 0.7 0.396449
Target:  5'- gCGgCGGCGGCUGCgGCGgcGGCUGCggcGGc -3'
miRNA:   3'- -GCaGCUGUCGGCGgCGC--CCGACGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 257 0.7 0.396449
Target:  5'- gCGgCGGCGGCUGCgGCGgcGGCUGCggcGGc -3'
miRNA:   3'- -GCaGCUGUCGGCGgCGC--CCGACGa--CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.