miRNA display CGI


Results 121 - 140 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 79267 0.7 0.396449
Target:  5'- -uUCGACgcGGgCGCCGaGGcGCUGCUGGc -3'
miRNA:   3'- gcAGCUG--UCgGCGGCgCC-CGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 26557 0.7 0.396449
Target:  5'- uCGcCGACGuacGCCGCCaccgcggcGCGGGaggGCUGGg -3'
miRNA:   3'- -GCaGCUGU---CGGCGG--------CGCCCga-CGACC- -5'
23573 3' -62.2 NC_005261.1 + 66588 0.7 0.396449
Target:  5'- cCGUCuGCAcGuuGCgCGCGaGCUGCUGGa -3'
miRNA:   3'- -GCAGcUGU-CggCG-GCGCcCGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 257 0.7 0.396449
Target:  5'- gCGgCGGCGGCUGCgGCGgcGGCUGCggcGGc -3'
miRNA:   3'- -GCaGCUGUCGGCGgCGC--CCGACGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 137976 0.7 0.396449
Target:  5'- gCGgCGGCGGCUGCgGCGgcGGCUGCggcGGc -3'
miRNA:   3'- -GCaGCUGUCGGCGgCGC--CCGACGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 137940 0.7 0.396449
Target:  5'- gCGgCGGCGGCUGCgGCGgcGGCUGCggcGGc -3'
miRNA:   3'- -GCaGCUGUCGGCGgCGC--CCGACGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 128143 0.7 0.396449
Target:  5'- aGgCGACGGUCGCCG-GGGCcGCgGGc -3'
miRNA:   3'- gCaGCUGUCGGCGGCgCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 71551 0.7 0.404626
Target:  5'- -cUCGAUcGCCGCCGaggcgcugGGGCUGCUcgcGGa -3'
miRNA:   3'- gcAGCUGuCGGCGGCg-------CCCGACGA---CC- -5'
23573 3' -62.2 NC_005261.1 + 78733 0.7 0.404626
Target:  5'- gCGUgCGACcGCCGCCGCuGGCgcgGC-GGc -3'
miRNA:   3'- -GCA-GCUGuCGGCGGCGcCCGa--CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 110317 0.7 0.404626
Target:  5'- aGUaCGGCAaccgcGCCGCCGCGGacgcGCUGCg-- -3'
miRNA:   3'- gCA-GCUGU-----CGGCGGCGCC----CGACGacc -5'
23573 3' -62.2 NC_005261.1 + 43839 0.7 0.404626
Target:  5'- uCGUCGAggaGGCCGCCGCc-GC-GCUGGc -3'
miRNA:   3'- -GCAGCUg--UCGGCGGCGccCGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 108312 0.7 0.412909
Target:  5'- gCGUCccaGACGGCCGCCGCGuGCUccGCg-- -3'
miRNA:   3'- -GCAG---CUGUCGGCGGCGCcCGA--CGacc -5'
23573 3' -62.2 NC_005261.1 + 118869 0.7 0.412909
Target:  5'- cCG-CGGCccuggccucGGCCaCCGCGGGCgcGCUGGu -3'
miRNA:   3'- -GCaGCUG---------UCGGcGGCGCCCGa-CGACC- -5'
23573 3' -62.2 NC_005261.1 + 70860 0.7 0.412909
Target:  5'- gGUCcagGGCGGCCGCCGUGGcGUgGCcGGc -3'
miRNA:   3'- gCAG---CUGUCGGCGGCGCC-CGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 72190 0.7 0.412909
Target:  5'- aCGUUGGCGGCgGCCGCGcGCgGCa-- -3'
miRNA:   3'- -GCAGCUGUCGgCGGCGCcCGaCGacc -5'
23573 3' -62.2 NC_005261.1 + 58533 0.7 0.412909
Target:  5'- -aUCGAgccCAGCCGCCGCccGGGCUcCUGc -3'
miRNA:   3'- gcAGCU---GUCGGCGGCG--CCCGAcGACc -5'
23573 3' -62.2 NC_005261.1 + 91426 0.7 0.420453
Target:  5'- gCG-CGAC-GCCGCCGCGGugaacgcGCUGCgcGGc -3'
miRNA:   3'- -GCaGCUGuCGGCGGCGCC-------CGACGa-CC- -5'
23573 3' -62.2 NC_005261.1 + 4230 0.7 0.421297
Target:  5'- aGUUGAgggugUAGCCGCCG-GGGCUGa-GGa -3'
miRNA:   3'- gCAGCU-----GUCGGCGGCgCCCGACgaCC- -5'
23573 3' -62.2 NC_005261.1 + 98672 0.7 0.421297
Target:  5'- gGggGACAGaCCGCCGCGcGcGCgcgggGCUGGc -3'
miRNA:   3'- gCagCUGUC-GGCGGCGC-C-CGa----CGACC- -5'
23573 3' -62.2 NC_005261.1 + 4336 0.7 0.421297
Target:  5'- gGcCaGCAGCgCGCCGCGGGCUuGCg-- -3'
miRNA:   3'- gCaGcUGUCG-GCGGCGCCCGA-CGacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.