miRNA display CGI


Results 141 - 160 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 108046 0.7 0.42468
Target:  5'- gCG-CGGCGGCCGCCucggcgcgcagcgcgGCGGGCgcgGCg-- -3'
miRNA:   3'- -GCaGCUGUCGGCGG---------------CGCCCGa--CGacc -5'
23573 3' -62.2 NC_005261.1 + 3529 0.7 0.42468
Target:  5'- gCG-CGGCGGCCGCCucggcgcgcagcgcgGCGGGCgcgGCg-- -3'
miRNA:   3'- -GCaGCUGUCGGCGG---------------CGCCCGa--CGacc -5'
23573 3' -62.2 NC_005261.1 + 67412 0.69 0.428932
Target:  5'- gCGcCGGCgcgcccggGGCCGCCggcGCGGacuuugaGCUGCUGGa -3'
miRNA:   3'- -GCaGCUG--------UCGGCGG---CGCC-------CGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 102625 0.69 0.429785
Target:  5'- --aCGGCuGCCGCgGCGGGgCcgggcGCUGGg -3'
miRNA:   3'- gcaGCUGuCGGCGgCGCCC-Ga----CGACC- -5'
23573 3' -62.2 NC_005261.1 + 110239 0.69 0.429785
Target:  5'- gCGUgGGCGGCgCGgCGCccgggGGGCUGCgGGc -3'
miRNA:   3'- -GCAgCUGUCG-GCgGCG-----CCCGACGaCC- -5'
23573 3' -62.2 NC_005261.1 + 106572 0.69 0.429785
Target:  5'- gCGcCGGCcccggGGCCGCCGCGcGGCgcuccucCUGGa -3'
miRNA:   3'- -GCaGCUG-----UCGGCGGCGC-CCGac-----GACC- -5'
23573 3' -62.2 NC_005261.1 + 55678 0.69 0.429785
Target:  5'- uG-CGGCGcGCgGCCGCGGGCgaGgaGGg -3'
miRNA:   3'- gCaGCUGU-CGgCGGCGCCCGa-CgaCC- -5'
23573 3' -62.2 NC_005261.1 + 55160 0.69 0.429785
Target:  5'- aG-CGcCGGCCGCCGCGGGg-GCgcgcagGGa -3'
miRNA:   3'- gCaGCuGUCGGCGGCGCCCgaCGa-----CC- -5'
23573 3' -62.2 NC_005261.1 + 33867 0.69 0.429785
Target:  5'- gGcCGGCGGCUGUucuCGCGGGCggcGCUGc -3'
miRNA:   3'- gCaGCUGUCGGCG---GCGCCCGa--CGACc -5'
23573 3' -62.2 NC_005261.1 + 61023 0.69 0.429785
Target:  5'- cCGUCGugGGgCGgcaCCGCGGcaGCUgGCUGGu -3'
miRNA:   3'- -GCAGCugUCgGC---GGCGCC--CGA-CGACC- -5'
23573 3' -62.2 NC_005261.1 + 29253 0.69 0.437511
Target:  5'- gCG-CGACgGGCCGCCGCcgcuggaGGGCccgcUGCUGa -3'
miRNA:   3'- -GCaGCUG-UCGGCGGCG-------CCCG----ACGACc -5'
23573 3' -62.2 NC_005261.1 + 133770 0.69 0.437511
Target:  5'- gCG-CGACgGGCCGCCGCcgcuggaGGGCccgcUGCUGa -3'
miRNA:   3'- -GCaGCUG-UCGGCGGCG-------CCCG----ACGACc -5'
23573 3' -62.2 NC_005261.1 + 36063 0.69 0.438374
Target:  5'- -aUCGACGugccGCCGCCGCuGGCgcaGCUGc -3'
miRNA:   3'- gcAGCUGU----CGGCGGCGcCCGa--CGACc -5'
23573 3' -62.2 NC_005261.1 + 84359 0.69 0.438374
Target:  5'- aGUCGAaggcGCCGcCCGCGGGCUcgGCcucGGc -3'
miRNA:   3'- gCAGCUgu--CGGC-GGCGCCCGA--CGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 69507 0.69 0.446187
Target:  5'- aCGcCGGCggcgggcugccggAGCUGgCGCGGGC-GCUGGc -3'
miRNA:   3'- -GCaGCUG-------------UCGGCgGCGCCCGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 10508 0.69 0.44706
Target:  5'- gCG-CGGCcGCCGCUGCGGGCcccGC-GGc -3'
miRNA:   3'- -GCaGCUGuCGGCGGCGCCCGa--CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 78111 0.69 0.44706
Target:  5'- uGUUcGCGGCCuacgugcCCGCGGGCgcGCUGGc -3'
miRNA:   3'- gCAGcUGUCGGc------GGCGCCCGa-CGACC- -5'
23573 3' -62.2 NC_005261.1 + 115025 0.69 0.44706
Target:  5'- gCG-CGGCcGCCGCUGCGGGCcccGC-GGc -3'
miRNA:   3'- -GCaGCUGuCGGCGGCGCCCGa--CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 132889 0.69 0.44706
Target:  5'- -uUCGGCaAGCCgggcGCCGCGGGCgGCg-- -3'
miRNA:   3'- gcAGCUG-UCGG----CGGCGCCCGaCGacc -5'
23573 3' -62.2 NC_005261.1 + 43280 0.69 0.44706
Target:  5'- gCGUCG-CGGCCGCCuuucccGCGGGggGCgccGGc -3'
miRNA:   3'- -GCAGCuGUCGGCGG------CGCCCgaCGa--CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.