miRNA display CGI


Results 161 - 180 of 436 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 43280 0.69 0.44706
Target:  5'- gCGUCG-CGGCCGCCuuucccGCGGGggGCgccGGc -3'
miRNA:   3'- -GCAGCuGUCGGCGG------CGCCCgaCGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 10508 0.69 0.44706
Target:  5'- gCG-CGGCcGCCGCUGCGGGCcccGC-GGc -3'
miRNA:   3'- -GCaGCUGuCGGCGGCGCCCGa--CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 79684 0.69 0.455841
Target:  5'- --aCGACGGCgcaggaGCC-CGGGCggcgGCUGGg -3'
miRNA:   3'- gcaGCUGUCGg-----CGGcGCCCGa---CGACC- -5'
23573 3' -62.2 NC_005261.1 + 98178 0.69 0.455841
Target:  5'- uGUCcuuGgAGCCGCCGgGGGCgcgGCgGGc -3'
miRNA:   3'- gCAGc--UgUCGGCGGCgCCCGa--CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 100925 0.69 0.455841
Target:  5'- gCGUCGccuGCAGCCGCUGCaGGCccGCg-- -3'
miRNA:   3'- -GCAGC---UGUCGGCGGCGcCCGa-CGacc -5'
23573 3' -62.2 NC_005261.1 + 97382 0.69 0.455841
Target:  5'- uGUCGccgcGCGGCUuucgcgccuGCCGCGGGCUugGCgGGc -3'
miRNA:   3'- gCAGC----UGUCGG---------CGGCGCCCGA--CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 134414 0.69 0.463823
Target:  5'- uGUgCGugAacugcugcuccacGCUGCuCGCgGGGCUGCUGGu -3'
miRNA:   3'- gCA-GCugU-------------CGGCG-GCG-CCCGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 39786 0.69 0.464714
Target:  5'- aCGUCGccggggggcggcGCGGCCGCCgGCGccaGGCU-CUGGc -3'
miRNA:   3'- -GCAGC------------UGUCGGCGG-CGC---CCGAcGACC- -5'
23573 3' -62.2 NC_005261.1 + 91548 0.69 0.464714
Target:  5'- cCGU-GGCGGCCGCCGUGGaGC-GCgcGGc -3'
miRNA:   3'- -GCAgCUGUCGGCGGCGCC-CGaCGa-CC- -5'
23573 3' -62.2 NC_005261.1 + 88933 0.69 0.464714
Target:  5'- gCG-CGGCGcucaCCGCCGCGGGCUuCUGc -3'
miRNA:   3'- -GCaGCUGUc---GGCGGCGCCCGAcGACc -5'
23573 3' -62.2 NC_005261.1 + 32228 0.69 0.464714
Target:  5'- cCG-CGGCGGUgGCCuucugcGCGGccgcGCUGCUGGa -3'
miRNA:   3'- -GCaGCUGUCGgCGG------CGCC----CGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 70659 0.69 0.464714
Target:  5'- -uUCGGCGccGCgGCCGCGGGCcGCa-- -3'
miRNA:   3'- gcAGCUGU--CGgCGGCGCCCGaCGacc -5'
23573 3' -62.2 NC_005261.1 + 98043 0.69 0.464714
Target:  5'- gGUacUGGCGGCCGCgggcggcgggacCGCGGGCgGCgGGu -3'
miRNA:   3'- gCA--GCUGUCGGCG------------GCGCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 10243 0.69 0.464714
Target:  5'- cCG-CGcACucGCCGCCGCGGGC--CUGGc -3'
miRNA:   3'- -GCaGC-UGu-CGGCGGCGCCCGacGACC- -5'
23573 3' -62.2 NC_005261.1 + 136745 0.69 0.464714
Target:  5'- cCG-CGGCGGUgGCCuucugcGCGGccgcGCUGCUGGa -3'
miRNA:   3'- -GCaGCUGUCGgCGG------CGCC----CGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 23611 0.69 0.468289
Target:  5'- uGUCGccGCcGCUGCCGgggcgcggcggggguCGGGCgGCUGGa -3'
miRNA:   3'- gCAGC--UGuCGGCGGC---------------GCCCGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 128128 0.69 0.468289
Target:  5'- uGUCGccGCcGCUGCCGgggcgcggcggggguCGGGCgGCUGGa -3'
miRNA:   3'- gCAGC--UGuCGGCGGC---------------GCCCGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 34848 0.69 0.470081
Target:  5'- ---aGGCGGCCGCgGCGcGGCggcgcgcggccgaGCUGGg -3'
miRNA:   3'- gcagCUGUCGGCGgCGC-CCGa------------CGACC- -5'
23573 3' -62.2 NC_005261.1 + 16835 0.69 0.472776
Target:  5'- cCGUCGcacucgggcaggcGCcGCCGCCGCGGGgcgcCUGCa-- -3'
miRNA:   3'- -GCAGC-------------UGuCGGCGGCGCCC----GACGacc -5'
23573 3' -62.2 NC_005261.1 + 60086 0.69 0.473677
Target:  5'- cCGgcagCGGCGGgCGCCG-GGGCgGCgGGg -3'
miRNA:   3'- -GCa---GCUGUCgGCGGCgCCCGaCGaCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.