miRNA display CGI


Results 181 - 200 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 60467 0.67 0.548155
Target:  5'- uCGUCGuCc-CCGCCGCcccGGCUGCguagGGg -3'
miRNA:   3'- -GCAGCuGucGGCGGCGc--CCGACGa---CC- -5'
23573 3' -62.2 NC_005261.1 + 44423 0.67 0.548155
Target:  5'- gCGgUGGCGGCgGCgCGCGGGCgGCgcGGc -3'
miRNA:   3'- -GCaGCUGUCGgCG-GCGCCCGaCGa-CC- -5'
23573 3' -62.2 NC_005261.1 + 42490 0.67 0.548155
Target:  5'- --cCGGCGGCgGCgGCGGcGCcGCUGa -3'
miRNA:   3'- gcaGCUGUCGgCGgCGCC-CGaCGACc -5'
23573 3' -62.2 NC_005261.1 + 34557 0.67 0.548155
Target:  5'- aCGggCGcuCGGCC-UCGCGGGCgucGCUGGa -3'
miRNA:   3'- -GCa-GCu-GUCGGcGGCGCCCGa--CGACC- -5'
23573 3' -62.2 NC_005261.1 + 10901 0.67 0.548155
Target:  5'- cCGcCGcucCGGCCcCCGCGGGCgGCaGGg -3'
miRNA:   3'- -GCaGCu--GUCGGcGGCGCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 56812 0.67 0.548155
Target:  5'- cCGaCGAC-GCCGCCuGUgccugGGGgaGCUGGg -3'
miRNA:   3'- -GCaGCUGuCGGCGG-CG-----CCCgaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 20180 0.67 0.548155
Target:  5'- uGcCG-CGGCCGCCagcGCGGGCgucgcgGCcGGg -3'
miRNA:   3'- gCaGCuGUCGGCGG---CGCCCGa-----CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 22062 0.67 0.548155
Target:  5'- gCGUCGgggacGCGGCCGCgacCGCGcGCUGCUu- -3'
miRNA:   3'- -GCAGC-----UGUCGGCG---GCGCcCGACGAcc -5'
23573 3' -62.2 NC_005261.1 + 135488 0.67 0.546243
Target:  5'- cCG-CGACGGcCCGCCGCGGcGCaagcgcaagucgGCcGGg -3'
miRNA:   3'- -GCaGCUGUC-GGCGGCGCC-CGa-----------CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 30970 0.67 0.546243
Target:  5'- cCG-CGACGGcCCGCCGCGGcGCaagcgcaagucgGCcGGg -3'
miRNA:   3'- -GCaGCUGUC-GGCGGCGCC-CGa-----------CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 115482 0.67 0.545287
Target:  5'- aCG-CGugGGCCGCCGCcGccccgcgcccgacuGGC-GCUGGu -3'
miRNA:   3'- -GCaGCugUCGGCGGCG-C--------------CCGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 6430 0.68 0.538613
Target:  5'- gCGcCGuCAGgCGCgGCGGGCgcgGCgucgGGg -3'
miRNA:   3'- -GCaGCuGUCgGCGgCGCCCGa--CGa---CC- -5'
23573 3' -62.2 NC_005261.1 + 106843 0.68 0.538613
Target:  5'- gCGUCGucCAGcCCGCCGCcuGGGggGCgGGc -3'
miRNA:   3'- -GCAGCu-GUC-GGCGGCG--CCCgaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 125271 0.68 0.538613
Target:  5'- uCGUcCGGgGGCCgcuggaagucagGCCGCGGGC-GCcGGa -3'
miRNA:   3'- -GCA-GCUgUCGG------------CGGCGCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 38261 0.68 0.538613
Target:  5'- --aCGcCAGCCuggGCUGgGGGCgGCUGGu -3'
miRNA:   3'- gcaGCuGUCGG---CGGCgCCCGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 87875 0.68 0.538613
Target:  5'- aCGUgaUGACGGgCGCgGCcuaccggcGGCUGCUGGu -3'
miRNA:   3'- -GCA--GCUGUCgGCGgCGc-------CCGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 3549 0.68 0.538613
Target:  5'- aGUCG-CAGUCGUCGgGuccuGGCgGCUGGu -3'
miRNA:   3'- gCAGCuGUCGGCGGCgC----CCGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 98881 0.68 0.538613
Target:  5'- aGgCGGCuGCCGCCGCGcGCaGCuUGGc -3'
miRNA:   3'- gCaGCUGuCGGCGGCGCcCGaCG-ACC- -5'
23573 3' -62.2 NC_005261.1 + 32513 0.68 0.538613
Target:  5'- cCGUgUGGCAGCCGCggcagacguCGCuGGC-GCUGGu -3'
miRNA:   3'- -GCA-GCUGUCGGCG---------GCGcCCGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 29474 0.68 0.537662
Target:  5'- cCGUgGcGCGGCgCGCCGCGGacgccgcggcgccGCcGCUGGc -3'
miRNA:   3'- -GCAgC-UGUCG-GCGGCGCC-------------CGaCGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.