miRNA display CGI


Results 201 - 220 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 71956 0.68 0.529129
Target:  5'- uG-CGACAGCCGCgGgCGcccgguggacGGCgUGCUGGu -3'
miRNA:   3'- gCaGCUGUCGGCGgC-GC----------CCG-ACGACC- -5'
23573 3' -62.2 NC_005261.1 + 125753 0.68 0.529129
Target:  5'- cCGg-GGCcagGGCUGCCGCGGGCUcgGCUa- -3'
miRNA:   3'- -GCagCUG---UCGGCGGCGCCCGA--CGAcc -5'
23573 3' -62.2 NC_005261.1 + 67954 0.68 0.529129
Target:  5'- cCGcUCGcGCGGCCGCCGC-GGCga-UGGa -3'
miRNA:   3'- -GC-AGC-UGUCGGCGGCGcCCGacgACC- -5'
23573 3' -62.2 NC_005261.1 + 98346 0.68 0.529129
Target:  5'- uGUCGACgcgggggcgggGGUgGgCGCGGGCU-CUGGc -3'
miRNA:   3'- gCAGCUG-----------UCGgCgGCGCCCGAcGACC- -5'
23573 3' -62.2 NC_005261.1 + 24304 0.68 0.529129
Target:  5'- aCGUgCGAgGGUCGCCGCGcccGCUGCcucGGc -3'
miRNA:   3'- -GCA-GCUgUCGGCGGCGCc--CGACGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 19028 0.68 0.528183
Target:  5'- gCGUCGcgggGCAGCCggagaGCCGCcaggcagggguacGGGCUGCgcGGc -3'
miRNA:   3'- -GCAGC----UGUCGG-----CGGCG-------------CCCGACGa-CC- -5'
23573 3' -62.2 NC_005261.1 + 116457 0.68 0.523467
Target:  5'- aCGUCGAguguguguguuuuGCCGgCGCGGGCgggGCgGGc -3'
miRNA:   3'- -GCAGCUgu-----------CGGCgGCGCCCGa--CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 98476 0.68 0.519706
Target:  5'- ---gGGCGGCCGuccuCCGCGGGCUcggGCgGGu -3'
miRNA:   3'- gcagCUGUCGGC----GGCGCCCGA---CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 69077 0.68 0.519706
Target:  5'- gCG-CGGCGGCgCGgUGCGGGUaGUUGGc -3'
miRNA:   3'- -GCaGCUGUCG-GCgGCGCCCGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 103183 0.68 0.519706
Target:  5'- cCGcCGcGCGGCCGCCGUuaGGGCgGCg-- -3'
miRNA:   3'- -GCaGC-UGUCGGCGGCG--CCCGaCGacc -5'
23573 3' -62.2 NC_005261.1 + 86249 0.68 0.519706
Target:  5'- aGUCGGCGGCggCGCCGCGGuccaGCaGCgcGGc -3'
miRNA:   3'- gCAGCUGUCG--GCGGCGCC----CGaCGa-CC- -5'
23573 3' -62.2 NC_005261.1 + 77913 0.68 0.519706
Target:  5'- gGagGugAGCCaGCUGCGGGCcgGCUa- -3'
miRNA:   3'- gCagCugUCGG-CGGCGCCCGa-CGAcc -5'
23573 3' -62.2 NC_005261.1 + 118383 0.68 0.519706
Target:  5'- gCG-CGGCccgaggcgcuGGCgGCCGCGGGCgccgcagccgcGCUGGc -3'
miRNA:   3'- -GCaGCUG----------UCGgCGGCGCCCGa----------CGACC- -5'
23573 3' -62.2 NC_005261.1 + 12291 0.68 0.519706
Target:  5'- aGUCcGCGuCCGCCGCGGGCacggGCg-- -3'
miRNA:   3'- gCAGcUGUcGGCGGCGCCCGa---CGacc -5'
23573 3' -62.2 NC_005261.1 + 13118 0.68 0.519706
Target:  5'- gCGUCGGCGGCCG-CG-GGGC-GCgugUGGu -3'
miRNA:   3'- -GCAGCUGUCGGCgGCgCCCGaCG---ACC- -5'
23573 3' -62.2 NC_005261.1 + 113285 0.68 0.519706
Target:  5'- aCGagGGCGugguccucucGCUGCCGCGGGC--CUGGg -3'
miRNA:   3'- -GCagCUGU----------CGGCGGCGCCCGacGACC- -5'
23573 3' -62.2 NC_005261.1 + 37082 0.68 0.519706
Target:  5'- gCGgCGGCGcGCCGCCGCGcGGCaGCc-- -3'
miRNA:   3'- -GCaGCUGU-CGGCGGCGC-CCGaCGacc -5'
23573 3' -62.2 NC_005261.1 + 65464 0.68 0.519706
Target:  5'- gCGUgCG-CGGCCGCCGUgcuGGGCaUGC-GGc -3'
miRNA:   3'- -GCA-GCuGUCGGCGGCG---CCCG-ACGaCC- -5'
23573 3' -62.2 NC_005261.1 + 80939 0.68 0.519706
Target:  5'- aCGUCGcGCGGCUGCuCGCGaGCaGCUGc -3'
miRNA:   3'- -GCAGC-UGUCGGCG-GCGCcCGaCGACc -5'
23573 3' -62.2 NC_005261.1 + 51357 0.68 0.514084
Target:  5'- gCG-CGGCcaaGGCCGCCGCGcccGGCggcguugagcgccgGCUGGc -3'
miRNA:   3'- -GCaGCUG---UCGGCGGCGC---CCGa-------------CGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.