miRNA display CGI


Results 101 - 120 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 5511 0.66 0.606319
Target:  5'- cCG-CGGCAGCgGCgGCGaGGCcGCcGGc -3'
miRNA:   3'- -GCaGCUGUCGgCGgCGC-CCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 106543 0.66 0.606319
Target:  5'- -cUCGGCGGCgGCCGCguccGGGCcgGCg-- -3'
miRNA:   3'- gcAGCUGUCGgCGGCG----CCCGa-CGacc -5'
23573 3' -62.2 NC_005261.1 + 29814 0.66 0.606319
Target:  5'- gGUUGccgugcacGCAGgCGCggugGCGcGGCUGCUGGa -3'
miRNA:   3'- gCAGC--------UGUCgGCGg---CGC-CCGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 2527 0.66 0.606319
Target:  5'- uCGgggCGGCAGUaggccgccagCGCCGCGG-C-GCUGGg -3'
miRNA:   3'- -GCa--GCUGUCG----------GCGGCGCCcGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 91321 0.66 0.60534
Target:  5'- ---gGACAGCCccGCgugcgugCGCGGGCUcugGCUGGc -3'
miRNA:   3'- gcagCUGUCGG--CG-------GCGCCCGA---CGACC- -5'
23573 3' -62.2 NC_005261.1 + 33458 0.66 0.60534
Target:  5'- cCGcCGccGCAGCCGCCGCcgcagccGGGCccGCUcgcGGg -3'
miRNA:   3'- -GCaGC--UGUCGGCGGCG-------CCCGa-CGA---CC- -5'
23573 3' -62.2 NC_005261.1 + 31060 0.66 0.60534
Target:  5'- gCGgCGGgAGCCGCCGCuGcccgcccGCgUGCUGGg -3'
miRNA:   3'- -GCaGCUgUCGGCGGCGcC-------CG-ACGACC- -5'
23573 3' -62.2 NC_005261.1 + 292 0.66 0.60534
Target:  5'- cCGcCGccGCAGCCGCCGCcgcagccGGGCccGCUcgcGGg -3'
miRNA:   3'- -GCaGC--UGUCGGCGGCG-------CCCGa-CGA---CC- -5'
23573 3' -62.2 NC_005261.1 + 135578 0.66 0.60534
Target:  5'- gCGgCGGgAGCCGCCGCuGcccgcccGCgUGCUGGg -3'
miRNA:   3'- -GCaGCUgUCGGCGGCGcC-------CG-ACGACC- -5'
23573 3' -62.2 NC_005261.1 + 137975 0.66 0.60534
Target:  5'- cCGcCGccGCAGCCGCCGCcgcagccGGGCccGCUcgcGGg -3'
miRNA:   3'- -GCaGC--UGUCGGCGGCG-------CCCGa-CGA---CC- -5'
23573 3' -62.2 NC_005261.1 + 136269 0.67 0.600452
Target:  5'- cCGUCgGGCAggcgcacguguaccuGCgCGCCGCGGuGCUGCc-- -3'
miRNA:   3'- -GCAG-CUGU---------------CG-GCGGCGCC-CGACGacc -5'
23573 3' -62.2 NC_005261.1 + 44307 0.67 0.600452
Target:  5'- ---gGGCcGCUGcCCGCGGGCgccgcagacgggggGCUGGg -3'
miRNA:   3'- gcagCUGuCGGC-GGCGCCCGa-------------CGACC- -5'
23573 3' -62.2 NC_005261.1 + 31752 0.67 0.600452
Target:  5'- cCGUCgGGCAggcgcacguguaccuGCgCGCCGCGGuGCUGCc-- -3'
miRNA:   3'- -GCAG-CUGU---------------CG-GCGGCGCC-CGACGacc -5'
23573 3' -62.2 NC_005261.1 + 39671 0.67 0.596545
Target:  5'- gGagGACGGCCGCCcgccggauuucGCGGGCgcagccuaccgGCcGGa -3'
miRNA:   3'- gCagCUGUCGGCGG-----------CGCCCGa----------CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 78887 0.67 0.596545
Target:  5'- uCGUggCGACGGCgGCgacccgGCGGGCgcgcacGCUGGc -3'
miRNA:   3'- -GCA--GCUGUCGgCGg-----CGCCCGa-----CGACC- -5'
23573 3' -62.2 NC_005261.1 + 77446 0.67 0.596545
Target:  5'- gGUCGuCAGCCagGCCcgggGCGcGGCUGCa-- -3'
miRNA:   3'- gCAGCuGUCGG--CGG----CGC-CCGACGacc -5'
23573 3' -62.2 NC_005261.1 + 85372 0.67 0.596545
Target:  5'- uGUUcGC-GCCGCCGCccucGGGCUuCUGGu -3'
miRNA:   3'- gCAGcUGuCGGCGGCG----CCCGAcGACC- -5'
23573 3' -62.2 NC_005261.1 + 54144 0.67 0.596545
Target:  5'- aCGcCGcacGCGGCCGUgCGCgGGGUUGCcGGg -3'
miRNA:   3'- -GCaGC---UGUCGGCG-GCG-CCCGACGaCC- -5'
23573 3' -62.2 NC_005261.1 + 85196 0.67 0.596545
Target:  5'- --cCGACGGCugccccggCGCCGCGGaaGC-GCUGGc -3'
miRNA:   3'- gcaGCUGUCG--------GCGGCGCC--CGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 103111 0.67 0.596545
Target:  5'- gGUgCGAC-GCCGCCG-GcGGCUGggGGg -3'
miRNA:   3'- gCA-GCUGuCGGCGGCgC-CCGACgaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.