miRNA display CGI


Results 121 - 140 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 89416 0.67 0.590692
Target:  5'- -cUCGGCGcgugcGCgGCCGcCGGGCuccccgcgcccgccgUGCUGGa -3'
miRNA:   3'- gcAGCUGU-----CGgCGGC-GCCCG---------------ACGACC- -5'
23573 3' -62.2 NC_005261.1 + 83172 0.67 0.586795
Target:  5'- -uUCGGCGGCCGagcucgccggccCCGCGcaGCUGCgcgGGg -3'
miRNA:   3'- gcAGCUGUCGGC------------GGCGCc-CGACGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 128063 0.67 0.586795
Target:  5'- aGgCGGCaggAGCCGUCGCaggugGGGCaggGCUGGc -3'
miRNA:   3'- gCaGCUG---UCGGCGGCG-----CCCGa--CGACC- -5'
23573 3' -62.2 NC_005261.1 + 117041 0.67 0.586795
Target:  5'- gCGUCcGCGGCCGCgcuCGCGccagcGGCUGCa-- -3'
miRNA:   3'- -GCAGcUGUCGGCG---GCGC-----CCGACGacc -5'
23573 3' -62.2 NC_005261.1 + 2346 0.67 0.586795
Target:  5'- aCGUCGu--GCUGCCGCaGGcCUGCUu- -3'
miRNA:   3'- -GCAGCuguCGGCGGCGcCC-GACGAcc -5'
23573 3' -62.2 NC_005261.1 + 56348 0.67 0.586795
Target:  5'- --cUGGCGGCCGCaGgGGGCgGgUGGg -3'
miRNA:   3'- gcaGCUGUCGGCGgCgCCCGaCgACC- -5'
23573 3' -62.2 NC_005261.1 + 37184 0.67 0.586795
Target:  5'- ---gGGC-GCUGCUgGCGGcGCUGCUGGc -3'
miRNA:   3'- gcagCUGuCGGCGG-CGCC-CGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 102233 0.67 0.586795
Target:  5'- -cUCGAUGGCCGCCGuCGcccGCUGCg-- -3'
miRNA:   3'- gcAGCUGUCGGCGGC-GCc--CGACGacc -5'
23573 3' -62.2 NC_005261.1 + 23546 0.67 0.586795
Target:  5'- aGgCGGCaggAGCCGUCGCaggugGGGCaggGCUGGc -3'
miRNA:   3'- gCaGCUG---UCGGCGGCG-----CCCGa--CGACC- -5'
23573 3' -62.2 NC_005261.1 + 113113 0.67 0.585822
Target:  5'- -cUCGGCAuggacaugcucucGcCCGCCGCGcGGCgGCUGa -3'
miRNA:   3'- gcAGCUGU-------------C-GGCGGCGC-CCGaCGACc -5'
23573 3' -62.2 NC_005261.1 + 12575 0.67 0.583876
Target:  5'- aCGUaUGACGcGCUGCUGgGGgaccgccucaaccaGCUGCUGGa -3'
miRNA:   3'- -GCA-GCUGU-CGGCGGCgCC--------------CGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 52862 0.67 0.582903
Target:  5'- cCGagGGCGGCgGCgcgaacauccucaGCGGGC-GCUGGg -3'
miRNA:   3'- -GCagCUGUCGgCGg------------CGCCCGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 37200 0.67 0.577076
Target:  5'- aCGcgCGGCuGCCgGCCGCGuucacaGGCgcGCUGGa -3'
miRNA:   3'- -GCa-GCUGuCGG-CGGCGC------CCGa-CGACC- -5'
23573 3' -62.2 NC_005261.1 + 28665 0.67 0.577076
Target:  5'- gCGUCGGCAGCgGCgagGgGGGCcGCggcGGu -3'
miRNA:   3'- -GCAGCUGUCGgCGg--CgCCCGaCGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 4433 0.67 0.577076
Target:  5'- cCGUCGAgCAGCCcgggcgggaugcGCCGCacgaGGGCgUGgaGGc -3'
miRNA:   3'- -GCAGCU-GUCGG------------CGGCG----CCCG-ACgaCC- -5'
23573 3' -62.2 NC_005261.1 + 67161 0.67 0.577076
Target:  5'- ---gGACGccccGcCCGCCGCGcGGCgGCUGGc -3'
miRNA:   3'- gcagCUGU----C-GGCGGCGC-CCGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 53658 0.67 0.577076
Target:  5'- ---aGGCGGCCugGCCGCGGGUcGC-GGc -3'
miRNA:   3'- gcagCUGUCGG--CGGCGCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 39876 0.67 0.577076
Target:  5'- --aCGGCcagcaGGCCGCgCGCGcGGCUgugcaGCUGGc -3'
miRNA:   3'- gcaGCUG-----UCGGCG-GCGC-CCGA-----CGACC- -5'
23573 3' -62.2 NC_005261.1 + 130738 0.67 0.577076
Target:  5'- cCGcCGACAuGaUCGCCGC--GCUGCUGGu -3'
miRNA:   3'- -GCaGCUGU-C-GGCGGCGccCGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 89251 0.67 0.577076
Target:  5'- -aUCGAguGCCuGUCguguGCGGGCgacggGCUGGc -3'
miRNA:   3'- gcAGCUguCGG-CGG----CGCCCGa----CGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.