miRNA display CGI


Results 141 - 160 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 37200 0.67 0.577076
Target:  5'- aCGcgCGGCuGCCgGCCGCGuucacaGGCgcGCUGGa -3'
miRNA:   3'- -GCa-GCUGuCGG-CGGCGC------CCGa-CGACC- -5'
23573 3' -62.2 NC_005261.1 + 89590 0.67 0.576105
Target:  5'- cCGggCGGgGGCCGgCGCaggggcgGGGCgugggGCUGGg -3'
miRNA:   3'- -GCa-GCUgUCGGCgGCG-------CCCGa----CGACC- -5'
23573 3' -62.2 NC_005261.1 + 103486 0.67 0.574166
Target:  5'- uGUCGagaaacaccaccccGCGGCCGCCaGgGGGCgccgaccGCUGa -3'
miRNA:   3'- gCAGC--------------UGUCGGCGG-CgCCCGa------CGACc -5'
23573 3' -62.2 NC_005261.1 + 99605 0.67 0.571261
Target:  5'- cCGUCGGCggcgggcucggccgcGGCCaacacccgccaGCCGCGGGCcGCcagcagGGa -3'
miRNA:   3'- -GCAGCUG---------------UCGG-----------CGGCGCCCGaCGa-----CC- -5'
23573 3' -62.2 NC_005261.1 + 54637 0.67 0.567392
Target:  5'- gCGgagagCGACgcgcugcuGGCgGCCGCGGGCgccGCgGGc -3'
miRNA:   3'- -GCa----GCUG--------UCGgCGGCGCCCGa--CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 37041 0.67 0.567392
Target:  5'- aGUCGGCGGCgGCggCGUGGGacgGCgcgUGGg -3'
miRNA:   3'- gCAGCUGUCGgCG--GCGCCCga-CG---ACC- -5'
23573 3' -62.2 NC_005261.1 + 35411 0.67 0.567392
Target:  5'- gCGagGcGCAGaCCGgCGCGcGGCgGCUGGg -3'
miRNA:   3'- -GCagC-UGUC-GGCgGCGC-CCGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 20534 0.67 0.567392
Target:  5'- gCGcCGGCcucagggccGGCCucGCCGCGGGCccgGCcGGg -3'
miRNA:   3'- -GCaGCUG---------UCGG--CGGCGCCCGa--CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 61507 0.67 0.567392
Target:  5'- --aCGuCGGCCaGCUGCGGGCaGUUGa -3'
miRNA:   3'- gcaGCuGUCGG-CGGCGCCCGaCGACc -5'
23573 3' -62.2 NC_005261.1 + 48835 0.67 0.567392
Target:  5'- uCGUCGGCcccGCCGCCGCGcagcaGGCccaGCgcccGGg -3'
miRNA:   3'- -GCAGCUGu--CGGCGGCGC-----CCGa--CGa---CC- -5'
23573 3' -62.2 NC_005261.1 + 104277 0.67 0.567392
Target:  5'- -cUCGGCGGCUG-CGCGGGCcucGCaGGc -3'
miRNA:   3'- gcAGCUGUCGGCgGCGCCCGa--CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 91721 0.67 0.567392
Target:  5'- gGcCGGCucGCCGCgGCGGGCUucGC-GGc -3'
miRNA:   3'- gCaGCUGu-CGGCGgCGCCCGA--CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 74277 0.67 0.567392
Target:  5'- gCGUCcgcggcgggcggGGCGGUCGCCGcCGGGCaGCa-- -3'
miRNA:   3'- -GCAG------------CUGUCGGCGGC-GCCCGaCGacc -5'
23573 3' -62.2 NC_005261.1 + 76149 0.67 0.567392
Target:  5'- gGUCGugGCGGCgcacgaCGCCGUGGcGCUGCa-- -3'
miRNA:   3'- gCAGC--UGUCG------GCGGCGCC-CGACGacc -5'
23573 3' -62.2 NC_005261.1 + 33816 0.67 0.567392
Target:  5'- uGUCuuugGGCGGCCGgggggCGCGGGCccccuggcGCUGGg -3'
miRNA:   3'- gCAG----CUGUCGGCg----GCGCCCGa-------CGACC- -5'
23573 3' -62.2 NC_005261.1 + 123884 0.67 0.55775
Target:  5'- cCG-CGGCuGCUGCCGCu-GCUGCUGc -3'
miRNA:   3'- -GCaGCUGuCGGCGGCGccCGACGACc -5'
23573 3' -62.2 NC_005261.1 + 137869 0.67 0.55775
Target:  5'- cCGcCGcCAccGCCGCCGggccgcgcCGGGCUGCgGGc -3'
miRNA:   3'- -GCaGCuGU--CGGCGGC--------GCCCGACGaCC- -5'
23573 3' -62.2 NC_005261.1 + 198 0.67 0.55775
Target:  5'- cCGcCGcCAccGCCGCCGggccgcgcCGGGCUGCgGGc -3'
miRNA:   3'- -GCaGCuGU--CGGCGGC--------GCCCGACGaCC- -5'
23573 3' -62.2 NC_005261.1 + 87716 0.67 0.55775
Target:  5'- --aCGACGGCCcuGCUGCGcuGGCUgggcgaggcGCUGGg -3'
miRNA:   3'- gcaGCUGUCGG--CGGCGC--CCGA---------CGACC- -5'
23573 3' -62.2 NC_005261.1 + 20642 0.67 0.55775
Target:  5'- uCGUCGGCAGgaucgacaGCgGCGGGC-GCgGGg -3'
miRNA:   3'- -GCAGCUGUCgg------CGgCGCCCGaCGaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.